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Sep 2022

Fabrication of a 3D high-resolution implant for neural stimulation-challenges and solutions

Gal Shpun, Nairouz Farah, Yoav Chemla, Amos Markus, Doron Gerber, Zeev Zalevsky, Yossi Mandel

Background- Tissue-integrated micro-electronic devices for neural stimulation hold a great potential in restoring the functionality of degenerated organs, specifically, retinal prostheses, which are aimed at vision restoration. The fabrication process of 3D polymer-metal devices with high resolution and a high aspect-ratio (AR) is very complex and faces many challenges that impair its functionality. Approach- Here we describe the optimization of the fabrication process of a bio-functionalized 3D high-resolution 1mm circular subretinal implant composed of SU-8 polymer integrated with dense gold microelectrodes (23µm pitch) passivated with 3D micro-well-like structures (20µm diameter, 3µm resolution). To this end, a nickel (Ni) evaporated silicon (Si) wafer was sequentially spin-coated with SU-8 and photolithographed layer-by-layer, with a sharp electrode formation achieved through a two-step bi-layer lift-off process using LOR/AZ, followed by Cr/Au thin-layer sputter deposition to increase the adhesion. Next, the device was released by overnight Ni wet-etching using nitric acid, after which it was bio-functionalized with N 2 plasma treatment and the addition of the bio-adhesion molecule arginine-glycine-aspartic acid (RGD). Main results-In-vitro and in-vivo investigations, including SEM and FIB cross section examinations, revealed a good structural design, as well as a good integration of the device in the rat sub-retinal space and cell migration into the wells. The reported process and optimization steps described here in detail can aid in the design and fabrication of similar neural implants. Conclusions- The reported process and optimization steps …

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Sep 2022 • Langmuir

Counterions under a Surface-Adsorbed Cationic Surfactant Monolayer: Structure and Thermodynamics

Eli Sloutskin, Lilach Tamam, Zvi Sapir, Benjamin M Ocko, Colin D Bain, Ivan Kuzmenko, Thomas Gog, Moshe Deutsch

The surface adsorption of ionic surfactants is fundamental for many widespread phenomena in life sciences and for a wide range of technological applications. However, direct atomic-resolution structural experimental studies of noncrystalline surface-adsorbed films are scarce. Thus, even the most central physical aspects of these films, such as their charge density, remain uncertain. Consequently, theoretical models based on contradicting assumptions as for the surface films’ ionization are widely used for the description and prediction of surface thermodynamics. We employ X-ray reflectivity to obtain the Ångström-scale surface-normal structure of surface-adsorbed films of the cationic surfactant cetyltrimethylammonium bromide (CTAB) in aqueous solutions at several different temperatures and concentrations. In conjunction with published neutron reflectivity data, we determine the surface-normal charge …

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Sep 2022 • arXiv preprint arXiv:2109.13038

Discrete sampling of extreme events modifies their statistics

Lior Zarfaty, Eli Barkai, David A Kessler

We explore the extreme value (EV) statistics of correlated random variables modeled via Langevin equations. Starting with an Ornstein-Uhlenbeck process, we find that when the trajectory is sampled discretely, long measurement times make the EV distribution converge to that originating from independent and identically distributed variables drawn from the process' equilibrium measure. A transition occurs when the sampling interval vanishes, for which case the EV statistics corresponds to that of the continuous process. We expand these findings to general potential fields, revealing that processes with a force that diminishes for large distances exhibit an opposite trend. Hence, we unveil a second transition, this time with respect to the potential's behavior at large displacements.

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Sep 2022 • Langmuir

Counterions under a Surface-Adsorbed Cationic Surfactant Monolayer: Structure and Thermodynamics

Eli Sloutskin, Lilach Tamam, Zvi Sapir, Benjamin M Ocko, Colin D Bain, Ivan Kuzmenko, Thomas Gog, Moshe Deutsch

The surface adsorption of ionic surfactants is fundamental for many widespread phenomena in life sciences and for a wide range of technological applications. However, direct atomic-resolution structural experimental studies of noncrystalline surface-adsorbed films are scarce. Thus, even the most central physical aspects of these films, such as their charge density, remain uncertain. Consequently, theoretical models based on contradicting assumptions as for the surface films’ ionization are widely used for the description and prediction of surface thermodynamics. We employ X-ray reflectivity to obtain the Ångström-scale surface-normal structure of surface-adsorbed films of the cationic surfactant cetyltrimethylammonium bromide (CTAB) in aqueous solutions at several different temperatures and concentrations. In conjunction with published neutron reflectivity data, we determine the surface-normal charge …

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Sep 2022 • bioRxiv

FLAIRR-seq: A novel method for single molecule resolution of near full-length immunoglobulin heavy chain repertoires

Easton E Ford, David Tieri, Oscar Rodriguez, Nancy Francoeur, Juan Soto, Justin Kos, Ayelet Peres, William Gibson, Catherine A Silver, Gintaras Deikus, Elizabeth Hudson, Cassandra R Woolley, Noam Beckmann, Alexander Charney, Thomas C Mitchell, Gur Yaari, Robert P Sebra, Corey T Watson, Melissa L Smith

Current Adaptive Immune Receptor Repertoire Sequencing (AIRR-seq) strategies resolve expressed antibody (Ab) transcripts with limited resolution of the constant region. Here we present a novel near full-length AIRR-seq (FLAIRR-Seq) method that utilizes targeted amplification by 5’ rapid amplification of cDNA ends (RACE), combined with single molecule, real-time sequencing to generate highly accurate (>Q40, 99.99%) IG heavy chain transcripts. FLAIRR-seq was benchmarked by comparing IG heavy chain variable (IGHV), diversity (IGHD), and joining (IGHJ) gene usage, complementarity-determining region 3 (CDR3) length, and somatic hypermutation to matched datasets generated with standard 5’ RACE AIRR-seq and full-length isoform sequencing. Together these data demonstrate robust, unbiased FLAIRR-seq performance using RNA samples derived from peripheral blood mononuclear cells, purified B cells, and whole blood, which recapitulated results generated by commonly used methods, while additionally resolving novel IG heavy chain constant (IGHC) gene features. FLAIRR-seq data provides, for the first time, simultaneous, single-molecule characterization of IGHV, IGHD, IGHJ, and IGHC region genes and alleles, allele-resolved subisotype definition, and high-resolution identification of class-switch recombination within a clonal lineage. In conjunction with genomic sequencing and genotyping of IGHC genes, FLAIRR-seq of the IgM and IgG repertoires from 10 individuals resulted in the identification of 32 unique IGHC alleles, 28 (87%) of which were previously uncharacterized. Together, these data demonstrate the …

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Sep 2022 • Small Methods

Stabilizing High‐Voltage LiNi0.5Mn1.5O4 Cathodes for High Energy Rechargeable Li Batteries by Coating With Organic Aromatic Acids and Their Li Salts

Sandipan Maiti, Hadar Sclar, Judith Grinblat, Michael Talianker, Yuval Elias, Xiaohan Wu, Aleksandr Kondrakov, Doron Aurbach

Here, three types of surface coatings based on adsorption of organic aromatic acids or their Li salts are applied as functional coating substrates to engineer the surface properties of high voltage LiNi0.5Mn1.5O4 (LNMO) spinel cathodes. The materials used as coating include 1,3,5‐benzene‐tricarboxylic acid (trimesic acid [TMA]), its Li‐salt, and 1,4‐benzene‐dicarboxylic acid (terephthalic acid). The surface coating involves simple ethanol liquid‐phase mixing and low‐temperature heat treatment under nitrogen flow. In typical comparative studies, TMA‐coated (3–5%) LNMO cathodes deliver >90% capacity retention after 400 cycles with significantly improved rate performance in Li‐coin cells at 30 °C compared to uncoated material with capacity retention of ≈40%. The cathode coating also prevents the rapid drop in the electrochemical activity of high voltage Li cells at 55 °C. Studies of high voltage full cells …

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Sep 2022 • The Journal of Physical Chemistry B 126 (39), 7486-7494, 2022

EPR spectroscopy provides new insights into complex biological reaction mechanisms

Lukas Hofmann, Sharon Ruthstein

In the last 20 years, the use of electron paramagnetic resonance (EPR) has made a pronounced and lasting impact in the field of structural biology. The advantage of EPR spectroscopy over other structural techniques is its ability to target even minor conformational changes in any biomolecule or macromolecular complex, independent of its size or complexity, or whether it is in solution or in the cell during a biological or chemical reaction. Here, we focus on the use of EPR spectroscopy to study transmembrane transport and transcription mechanisms. We discuss experimental and analytical concerns when referring to studies of two biological reaction mechanisms, namely, transfer of copper ions by the human copper transporter hCtr1 and the mechanism of action of the Escherichia coli copper-dependent transcription factor CueR. Last, we elaborate on future avenues in the field of EPR structural biology.

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Sep 2022 • IEEE Journal of Selected Topics in Quantum Electronics

Deep tattoo ink depth profiling in ex vivo porcine skin using diffuse reflectance spectroscopy

Pavitra Sokke Rudraiah, Sukanta Nandi, Hamootal Duadi, Dror Fixler

Human body is a complex system composed of various chemicals, and thus inserting any foreign chemicals can lead to long-lasting damage. One such process is tattooing, which is widely common among all sections of human society. Nevertheless, there is a huge demand for safe tattoo removal, intending to target only the ink particles and protect the skin components. This work discusses the development of a non-invasive technique to assess tattoo ink location in the deep tissue layers. Tattoo ink was injected systematically from 1--6 mm depth, parallel to the surface of an ex vivo porcine skin. The adopted methodology of the crossover point-based diffuse reflectance (DR) technique could effectively and precisely detect the tattoo ink location in the depths. A good quantitative agreement between the detected ink location and injected ink depth on cross-section tattooed skins were observed. The DR technique thus …

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Sep 2022 • arXiv preprint arXiv:2209.03410

Exponential tails and asymmetry relations for the spread of biased random walks

Stanislav Burov, Wanli Wang, Eli Barkai

Exponential, and not Gaussian, decay of probability density functions was studied by Laplace in the context of his analysis of errors. Such Laplace propagators for the diffusive motion of single particles in disordered media were recently observed in numerous experimental systems. What will happen to this universality when an external driving force is applied? Using the ubiquitous continuous time random walk with bias, and the Crooks relation in conjunction with large deviations theory, we derive two properties of the positional probability density function that hold for a wide spectrum of random walk models: (I) Universal asymmetric exponential decay of for large , and (II) Existence of a time transformation that for large allows to express in terms of the propagator of the unbiased process (measured at a shorter time). These findings allow us to establish how the symmetric exponential-like tails, measured in many unbiased processes, will transform into asymmetric Laplace tails when an external force is applied.

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Sep 2022 • Sensors and Actuators B: Chemical

Nitrogen-doped carbon dots as a highly selective and sensitive fluorescent probe for sensing Mg2+ ions in aqueous solution, and their application in the detection and imaging …

Hari Krishna Sadhanala, Saurav Aryal, Kusha Sharma, Ziv Orpaz, Shulamit Michaeli, Aharon Gedanken

The magnesium (Mg2+) ion is the second most abundant intracellular cation after potassium, and it is involved in a variety of biological processes and physiological functions. Because of the different effects which are dependent on Mg2+ ion concentration, it is critical to monitor Mg2+ ion levels in biological systems. Here, we report the hydrothermal synthesis of photoluminescent N-doped carbon dots (NCDs) using 4-Hydroxybenzaldehyde and 1, 2, 4, 5-benzenetetramine tetrahydrochloride as carbon and nitrogen sources, respectively. The as-synthesized NCDs demonstrated excitation dependent photoluminescence (PL) with a quantum yield of 16.2%. Because of water dispersibility and chelating functional groups, NCDs were used for highly selective detection of Mg2+ ions using ratiometric PL enhancement with a detection limit of 60 μM. Following that, based on highly biocompatibility and sensing of Mg2+ ions …

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Sep 2022 • Small

Bridging 1D Inorganic and Organic Synthesis to Fabricate Ultrathin Bismuth‐Based Nanotubes with Controllable Size as Anode Materials for Secondary Li Batteries

Kai Zong, Tianzhi Chu, Dongqing Liu, Andleeb Mehmood, Tianju Fan, Waseem Raza, Arshad Hussain, Yonggui Deng, Wei Liu, Ali Saad, Jie Zhao, Ying Li, Doron Aurbach, Xingke Cai

The growth of ultrathin 1D inorganic nanomaterials with controlled diameters remains challenging by current synthetic approaches. A polymer chain templated method is developed to synthesize ultrathin Bi2O2CO3 nanotubes. This formation of nanotubes is a consequence of registry between the electrostatic absorption of functional groups on polymer template and the growth habit of Bi2O2CO3. The bulk bismuth precursor is broken into nanoparticles and anchored onto the polymer chain periodically. These nanoparticles react with the functional groups and gradually evolve into Bi2O2CO3 nanotubes along the chain. 5.0 and 3.0 nm tubes with narrow diameter deviation are synthesized by using branched polyethyleneimine and polyvinylpyrrolidone as the templates, respectively. Such Bi2O2CO3 nanotubes show a decent lithium‐ion storage capacity of around 600 mA h g−1 at 0.1 A g−1 after 500 cycles, higher …

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Sep 2022 • Colloids and Surfaces A: Physicochemical and Engineering Aspects

Design of silane-based UV-absorbing thin coatings on polyethylene films

Taly Iline-Vul, Naftali Kanovsky, Daniel Yom-Tov, Merav Nadav-Tsubery, Shlomo Margel

UV-absorbing surfaces have received much attention and focus due to their relevance in a variety of research applications and industrial fields. However, these surfaces currently suffer from drawbacks such as instability due to leakage of the entrapped UV-absorbing compounds, complicated non-green synthetic processes, and/or lack of good optical properties. We propose a modified Stöber method where UV absorbing silane monomers containing the group2-hydroxy-4-(3-triethoxysilylpropoxy) diphenylketone (SiUV) in presence of the mesoporous producing surfactant cetyltrimethyl ammonium chloride (CTAC) was polymerized in an ethanol/water continuous phase under basic conditions. UV absorbing thin coatings onto polyethylene (PE) films were then spread with the former dispersion on corona-treated PE, followed by a thermal drying process. These films were highly UV absorbent and durable with …

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Sep 2022

Dynamics of optical vortices in 2D materials

Yaniv Kurman, Raphael Dahan, Hanan Sheinfux, Gilles Rosolen, Eli Jenzen, James Edgar, Frank Koppens, Ido Kaminer

Quantized vortices are topological defects found in different two-dimensional geometries, from liquid crystals to ferromagnets, famously involved in spontaneous symmetry breaking and phase transitions. Their optical counterparts appear in planar geometries as a universal wave phenomenon, possessing topologically protected orbital angular momentum (OAM). So far, the spatio-temporal dynamics of optical vortices, including vortex-pair creation and annihilation, was observed only in Bose-Einstein condensates. Here we observe optical vortices in 2D materials and measure their dynamics, including events of pair-creation and annihilation. The vortices conserve their combined OAM during pair creation/annihilation events and determine the surrounding field profile throughout their motion between these events. The vortices are made of phonon polaritons in hexagonal boron nitride, which we directly probe using free electrons in an ultrafast transmission electron microscope. Our findings promote future investigations of vortex phenomena in 2D material platforms, toward their use for chiral plasmonics, quantum simulators, and control over selection rules in light-matter interactions.

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Sep 2022 • Journal of Biomedical Optics

Non-invasive blood glucose sensing by machine learning of optic fiber-based speckle pattern variation

Deep Pal, Sergey Agadarov, Yevgeny Beiderman, Yafim Beiderman, Amitesh Kumar, Zeev Zalevsky

Significance: The ability to perform frequent non-invasive monitoring of glucose in the bloodstream is very applicable for diabetic patients.Aim: We experimentally verified a non-invasive multimode fiber-based technique for sensing glucose concentration in the bloodstream by extracting and analyzing the collected speckle patterns.Approach: The proposed sensor consists of a laser source, digital camera, computer, multimode fiber, and alternating current (AC) generated magnetic field source. The experiments were performed using a covered (with cladding and jacket) and uncovered (without cladding and jacket) multimode fiber touching the skin under a magnetic field and without it. The subject’s finger was placed on a fiber to detect the glucose concentration. The method tracks variations in the speckle patterns due to light interaction with the bloodstream affected by blood glucose.Results: The uncovered fiber …

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Sep 2022 • Langmuir

Counterions under a surface-adsorbed cationic surfactant monolayer: structure and thermodynamics

Eli Sloutskin, Lilach Tamam, Zvi Sapir, Benjamin M Ocko, Colin D Bain, Ivan Kuzmenko, Thomas Gog, Moshe Deutsch

The surface adsorption of ionic surfactants is fundamental for many widespread phenomena in life sciences and for a wide range of technological applications. However, direct atomic-resolution structural experimental studies of noncrystalline surface-adsorbed films are scarce. Thus, even the most central physical aspects of these films, such as their charge density, remain uncertain. Consequently, theoretical models based on contradicting assumptions as for the surface films’ ionization are widely used for the description and prediction of surface thermodynamics. We employ X-ray reflectivity to obtain the Ångström-scale surface-normal structure of surface-adsorbed films of the cationic surfactant cetyltrimethylammonium bromide (CTAB) in aqueous solutions at several different temperatures and concentrations. In conjunction with published neutron reflectivity data, we determine the surface-normal charge …

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Sep 2022 • ACS Catalysis

Mixed-metal nickel–iron oxide aerogels for oxygen evolution reaction

Wenjamin Moschkowitsch, Noam Zion, Hilah C Honig, Naomi Levy, David A Cullen, Lior Elbaz

Alkaline electrolyte membrane electrolyzers are a promising technology to efficiently produce clean hydrogen without the use of critical raw materials. At the heart of these electrolyzers are the electrocatalysts, which facilitate the cathodic and anodic reactions, with the latter oxygen evolution reaction (OER) being the most sluggish. In recent years, aerogels have become a very well-studied class of materials due to their unique properties, including very high surface area. Until now, aerogels have not been used to catalyze the OER by themselves but were mainly considered catalyst supports. Here, mixed-metal nickel–iron oxide aerogels were synthesized with a modified epoxide route synthesis and tested as OER catalysts. Depending on the Ni/Fe ratio, they show very high catalytic activity and low overpotential to reach 10 mA cm–2 (at η = 380 mV). This activity is beyond that of the existing state-of-the-art platinum …

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Sep 2022 • Journal of nanotheranostics

Antibody delivery into the brain by radiosensitizer nanoparticles for targeted glioblastoma therapy

Omer Gal, Oshra Betzer, Liat Rousso-Noori, Tamar Sadan, Menachem Motiei, Maxim Nikitin, Dinorah Friedmann-Morvinski, Rachela Popovtzer, Aron Popovtzer

Background: Glioblastoma is the most lethal primary brain malignancy in adults. Standard of care treatment, consisting of temozolomide (TMZ) and adjuvant radiotherapy (RT), mostly does not prevent local recurrence. The inability of drugs to enter the brain, in particular antibody-based drugs and radiosensitizers, is a crucial limitation to effective glioblastoma therapy. Methods: Here, we developed a combined strategy using radiosensitizer gold nanoparticles coated with insulin to cross the blood–brain barrier and shuttle tumor-targeting antibodies (cetuximab) into the brain. Results: Following intravenous injection to an orthotopic glioblastoma mouse model, the nanoparticles specifically accumulated within the tumor. Combining targeted nanoparticle injection with TMZ and RT standard of care significantly inhibited tumor growth and extended survival, as compared to standard of care alone. Histological analysis of tumors showed that the combined treatment eradicated tumor cells, and decreased tumor vascularization, proliferation, and repair. Conclusions: Our findings demonstrate radiosensitizer nanoparticles that effectively deliver antibodies into the brain, target the tumor, and effectively improve standard of care treatment outcome in glioblastoma.

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Sep 2022 • Journal of Colloid and Interface Science

Salt-induced stability and modified interfacial energetics in self-faceting emulsion droplets

Pilkhaz M Nanikashvili, Alexander V Butenko, Moshe Deutsch, Daeyeon Lee, Eli Sloutskin


Sep 2022 • Journal of Biomedical Optics

Non-invasive blood glucose sensing by machine learning of optic fiber-based speckle pattern variation

Deep Pal, Sergey Agadarov, Yevgeny Beiderman, Yafim Beiderman, Amitesh Kumar, Zeev Zalevsky


Sep 2022 • arXiv preprint arXiv:2109.10326

Structured transmittance illumination coherence holography

Aditya Chandra Mandal, Tushar Sarkar, Zeev Zalevsky, Rakesh Kumar Singh

The coherence holography offers an unconventional way to reconstruct the hologram where an incoherent light illumination is used for reconstruction purposes, and object encoded into the hologram is reconstructed as the distribution of the complex coherence function. Measurement of the coherence function usually requires an interferometric setup and array detectors. This paper presents an entirely new idea of reconstruction of the complex coherence function in the coherence holography without an interferometric setup. This is realized by structured pattern projections on the incoherent source structure and implementing measurement of the cross-covariance of the intensities by a single-pixel detector. This technique, named structured transmittance illumination coherence holography (STICH), helps to reconstruct the complex coherence from the intensity measurement in a single-pixel detector without an interferometric setup and also keeps advantages of the intensity correlations. A simple experimental setup is presented as a first step to realize the technique, and results based on the computer modeling of the experimental setup are presented to show validation of the idea.

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Sep 2022 • ACS Catalysis

Mixed-Metal Nickel–Iron Oxide Aerogels for Oxygen Evolution Reaction

Wenjamin Moschkowitsch, Noam Zion, Hilah C Honig, Naomi Levy, David A Cullen, Lior Elbaz

Alkaline electrolyte membrane electrolyzers are a promising technology to efficiently produce clean hydrogen without the use of critical raw materials. At the heart of these electrolyzers are the electrocatalysts, which facilitate the cathodic and anodic reactions, with the latter oxygen evolution reaction (OER) being the most sluggish. In recent years, aerogels have become a very well-studied class of materials due to their unique properties, including very high surface area. Until now, aerogels have not been used to catalyze the OER by themselves but were mainly considered catalyst supports. Here, mixed-metal nickel–iron oxide aerogels were synthesized with a modified epoxide route synthesis and tested as OER catalysts. Depending on the Ni/Fe ratio, they show very high catalytic activity and low overpotential to reach 10 mA cm–2 (at η = 380 mV). This activity is beyond that of the existing state-of-the-art platinum …

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