Nov 2024 • Physical Review Research
Shirel Davidyan, Daniel A Matoz-Fernandez, Alexander V Butenko, Ireth García-Aguilar, Luca Giomi, Eli Sloutskin
The closed topology of spherical crystals renders the presence of topological defects inevitable. These defects can organize in a plethora of different structures, such as “clouds” or grain boundary “scars”, challenging for theoretical modeling and experimental visualization. Visualizing the defects by fluorescent dye adsorption, we reveal ion concentration control of a clouds-to-scars transition, which we attribute to commonly neglected defects' core energy. The consequent line tension energy probes the defects' molecular scale energetics, enabling pattern tuning for future applications.
Show moreNov 2024 • Journal of Virology
Qingyang Chen, Xiaojuan Li, Li Quan, Rihong Zhou, Xiangpeng Liu, Lu Cheng, Ronit Sarid, Ersheng Kuang
Lytic replication is essential for persistent infection of Kaposi’s sarcoma-associated herpesvirus (KSHV) and the pathogenesis of related diseases, and many cellular pathways are hijacked by KSHV proteins to initiate and control the lytic replication of this virus. However, the mechanism involved in KSHV lytic replication from the early to the late phases remains largely undetermined. We previously revealed that KSHV open reading frame 45 (ORF45) plays important roles in late transcription and translation. In the present study, we revealed that the Forkhead box proteins FoxK1 and FoxK2 are ORF45-binding proteins and are essential for KSHV lytic gene expression and virion production, and that depletion of FoxK1 or FoxK2 significantly suppresses the expression of many late viral genes. FoxK1 and FoxK2 directly bind to the promoters of several late viral genes, ORF45 augments the promoter binding and …
Show moreOct 2024 • Bulletin of the American Physical Society
Nicholas Hartley, Andrew Aquila, James Baxter, Scott Curtis, Arianna Gleason, Siegfried Glenzer, Justin Goodrich, Alex Halavanau, Janita Hussain, Abigail Hardy, Taito Osaka, Norimasa Ozaki, Sharon Shwartz, Richard Sandberg
ZP12. 00011: Down-Converted X-ray Pair Generation at an X-ray Free Electron Laser*AbstractPresenter:Nicholas John Hartley(SLAC-Natl Accelerator Lab)Authors:Nicholas John Hartley(SLAC-Natl Accelerator Lab)Andrew L Aquila(Linac Coherent Light Source, SLAC National Accelerator Laboratory)James Baxter(Linac Coherent Light Source, SLAC National Accelerator Laboratory)Scott Curtis(Brigham Young University)Arianna E Gleason(SLAC-Natl Accelerator Lab)Siegfried H Glenzer(SLAC National Accelerator Laboratory)Justin Goodrich(Brookhaven National Laboratory)Alex Halavanau(SLAC National Accelerator Laboratory)Janita Hussain(SLAC National Accelerator Laboratory)Abigail M Hardy(Brigham Young University)Taito Osaka(RIKEN SPring-8 Center)Norimasa Ozaki(Osaka Univ)Sharon Shwartz(Bar-Ilan University)Richard Lunt Sandberg(Brigham Young University)Spontaneous Parametric Down …
Show moreOct 2024 • Optics Express
Shiran Levy, Nathalie Lander Gower, Silvia Piperno, Asaf Albo
In this study, we address the challenges that result from line broadening on m-plane GaN terahertz quantum cascade lasers (THz QCLs). While past research has highlighted the difficulty of line broadening in GaN THz QCLs, our work varies from previous studies in that it questions the primary impact attributed to the strong longitudinal-optical (LO) phonon coupling. We investigate carrier transport in an m-plane GaN two-well (TW) THz QCL, using non-equilibrium Green's functions (NEGF) to quantify gain while accounting for correlation effects in level broadening. Our study reveals that LO-phonon is not the primary contributor to line broadening at relatively high doping levels in our model. Moreover, despite the observed substantial broadening, increasing the doping density by an order of magnitude over the value of GaAs-based THz QCLs leads to a substantial gain rise. These results suggest the feasibility of …
Show moreOct 2024 • Journal of Magnesium and Alloys, 2024
Dedy Setiawan, Hyeonjun Lee, Jangwook Pyun, Amey Nimkar, Netanel Shpigel, Daniel Sharon, Seung-Tae Hong, Doron Aurbach, Munseok S Chae
Magnesium-ion batteries (MIBs) are promising candidates for lithium-ion batteries because of their abundance, non-toxicity, and favorable electrochemical properties. This review explores the reaction mechanisms and electrochemical characteristics of Mg-alloy anode materials. While Mg metal anodes provide high volumetric capacity and dendrite-free electrodeposition, their practical application is hindered by challenges such as sluggish Mg²⁺ ion diffusion and electrolyte compatibility. Alloy-type anodes that incorporate groups XIII, XIV, and XV elements have the potential to overcome these limitations. We review various Mg alloys, emphasizing their alloying/dealloying reaction mechanisms, their theoretical capacities, and the practical aspects of MIBs. Furthermore, we discuss the influence of the electrolyte composition on the reversibility and efficiency of these alloy anodes. Emphasis is placed on overcoming …
Show moreOct 2024 • mBio
Alessandra Lo Sciuto, Francesca D'Angelo, Maria Concetta Spinnato, Pierre Simon Garcia, Shirley Genah, Cervoni Matteo, Emmanuel Séchet, Ehud Banin, Frédéric Barras, Francesco Imperi
Iron-sulfur [Fe-S] clusters are essential protein cofactors allowing bacteria to perceive environmental redox modification and to adapt to iron limitation. Escherichia coli, which served as a bacterial model, contains two [Fe-S] cluster biogenesis systems, ISC and SUF, which ensure [Fe-S] cluster synthesis under balanced and stress conditions, respectively. However, our recent phylogenomic analyses revealed that most bacteria possess only one [Fe-S] cluster biogenesis system, most often SUF. The opportunist human pathogen Pseudomonas aeruginosa is atypical as it harbors only ISC. Here, we confirmed the essentiality of ISC in P. aeruginosa under both normal and stress conditions. Moreover, P. aeruginosa ISC restored viability, under balanced growth conditions, to an E. coli strain lacking both ISC and SUF. Reciprocally, the E. coli SUF system sustained growth and [Fe-S] cluster-dependent enzyme activities of …
Show moreOct 2024 • arXiv preprint arXiv:2310.02644
Lorenzo Orsini, Hanan Herzig Sheinfux, Yandong Li, Seojoo Lee, Gian Marcello Andolina, Orazio Scarlatella, Matteo Ceccanti, Karuppasamy Soundarapandian, Eli Janzen, James H Edgar, Gennady Shvets, Frank HL Koppens
Topological nanophotonics presents the potential for cutting-edge photonic systems, with a core aim revolving around the emergence of topological edge states. These states are primed to propagate robustly while embracing deep subwavelength confinement that defies diffraction limits. Such attributes make them particularly appealing for nanoscale applications, where achieving these elusive states has remained challenging. We unveil the first experimental proof of deep subwavelength topological edge states by implementing periodic modulation of hyperbolic phonon polaritons within a Van der Waals heterostructure. This finding represents a significant milestone in the field of nanophotonics, and it can be directly extended to and hybridized with other Van der Waals materials in various applications. The extensive scope for material substitution facilitates broadened operational frequency ranges, streamlined integration of diverse polaritonic materials, and compatibility with electronic and excitonic systems.
Show moreOct 2024 • Small
Naresh Vangapally, David Lusztig, Suman Rathod, Amreen Bano, Hadar Scalar, Sri Harsha Akella, Malachi Noked, Dan T Major, Ion C Halalay, Suresh Sriramulu, Shalom Luski, Doron Aurbach
Li‐ion batteries based on high specific capacity LixSiO‐Graphite anodes and LiNi0.89Co0.05 Mn0.05Al0.01O2 (NCMA) cathodes may have numerous practical applications owing to high energy density without a necessary compromise on safety. SiO, which is an attractive Li insertion anode material, offers more cycling stability than Si and a higher capacity than graphite. Therefore, a new trend has emerged for developing composite C‐Si anodes, possessing the excellent cyclability of graphite coupled with high capacity SiO. The composite structure described herein prevents the volume expansion of SiO and maintains the structural integrity during prolonged cycling. However, graphite electrodes suffer from exfoliation in propylene carbonate (PC) based electrolyte solutions, which avoids well known safety benefits related to a possible use of PC based electrolyte solutions in all kinds of Li batteries. Herein, it is …
Show moreOct 2024 • Optics & Laser Technology
Ricardo Rubio-Oliver, Vicente Micó, Zeev Zalevsky, Javier García, Jose Angel Picazo-Bueno
Digital holographic microscopy (DHM) is a very popular interferometric technique for quantitative phase imaging (QPI). In DHM, an interferometer is combined with a microscope to create interference between an imaging beam containing information about the analysed sample and a clear reference beam carrying no sample information. To exploit the capability of reference beam in terms of useful sample information, we have recently proposed Cepstrum-based Interferometric Microscopy (CIM) [Opt. Las. Tech. 174, 110,626 (2024)] as a novel methodology involving the interference of two imaging beams carrying different sample information and to accurately retrieve quantitative phase data of both beams. In the earlier implementation, proof-of-concept of CIM was demonstrated for a Michelson-based layout requiring manual adjustments during the CIM methodology and validated only for low numerical aperture (NA …
Show moreOct 2024 • Small
Naresh Vangapally, David Lusztig, Suman Rathod, Amreen Bano, Hadar Scalar, Sri Harsha Akella, Malachi Noked, Dan T Major, Ion C Halalay, Suresh Sriramulu, Shalom Luski, Doron Aurbach
Li‐ion batteries based on high specific capacity LixSiO‐Graphite anodes and LiNi0.89Co0.05 Mn0.05Al0.01O2 (NCMA) cathodes may have numerous practical applications owing to high energy density without a necessary compromise on safety. SiO, which is an attractive Li insertion anode material, offers more cycling stability than Si and a higher capacity than graphite. Therefore, a new trend has emerged for developing composite C‐Si anodes, possessing the excellent cyclability of graphite coupled with high capacity SiO. The composite structure described herein prevents the volume expansion of SiO and maintains the structural integrity during prolonged cycling. However, graphite electrodes suffer from exfoliation in propylene carbonate (PC) based electrolyte solutions, which avoids well known safety benefits related to a possible use of PC based electrolyte solutions in all kinds of Li batteries. Herein, it is …
Show moreOct 2024 • PRiME 2024 (October 6-11, 2024)
Malachi Noked, Akanksha Joshi, Sankalpita Chakraborty, Sri Harsha Akella, Mia Ramos
Oct 2024 • Nature Medicine
Johanna Klughammer, Daniel L Abravanel, Åsa Segerstolpe, Timothy R Blosser, Yury Goltsev, Yi Cui, Daniel R Goodwin, Anubhav Sinha, Orr Ashenberg, Michal Slyper, Sébastien Vigneau, Judit Jané‐Valbuena, Shahar Alon, Chiara Caraccio, Judy Chen, Ofir Cohen, Nicole Cullen, Laura K DelloStritto, Danielle Dionne, Janet Files, Allison Frangieh, Karla Helvie, Melissa E Hughes, Stephanie Inga, Abhay Kanodia, Ana Lako, Colin MacKichan, Simon Mages, Noa Moriel, Evan Murray, Sara Napolitano, Kyleen Nguyen, Mor Nitzan, Rebecca Ortiz, Miraj Patel, Kathleen L Pfaff, Caroline Porter, Asaf Rotem, Sarah Strauss, Robert Strasser, Aaron R Thorner, Madison Turner, Isaac Wakiro, Julia Waldman, Jingyi Wu, Jorge Gómez Tejeda Zañudo, Diane Zhang, Nancy U Lin, Sara M Tolaney, Eric P Winer, Edward S Boyden, Fei Chen, Garry P Nolan, Scott J Rodig, Xiaowei Zhuang, Orit Rozenblatt-Rosen, Bruce E Johnson, Aviv Regev, Nikhil Wagle
Although metastatic disease is the leading cause of cancer-related deaths, its tumor microenvironment remains poorly characterized due to technical and biospecimen limitations. In this study, we assembled a multi-modal spatial and cellular map of 67 tumor biopsies from 60 patients with metastatic breast cancer across diverse clinicopathological features and nine anatomic sites with detailed clinical annotations. We combined single-cell or single-nucleus RNA sequencing for all biopsies with a panel of four spatial expression assays (Slide-seq, MERFISH, ExSeq and CODEX) and H&E staining of consecutive serial sections from up to 15 of these biopsies. We leveraged the coupled measurements to provide reference points for the utility and integration of different experimental techniques and used them to assess variability in cell type composition and expression as well as emerging spatial expression …
Show moreOct 2024 • Nature nanotechnology
Longlong Wang, Ayan Mukherjee, Chang-Yang Kuo, Sankalpita Chakrabarty, Reut Yemini, Arrelaine A Dameron, Jaime W DuMont, Sri Harsha Akella, Arka Saha, Sarah Taragin, Hagit Aviv, Doron Naveh, Daniel Sharon, Ting-Shan Chan, Hong-Ji Lin, Jyh-Fu Lee, Chien-Te Chen, Boyang Liu, Xiangwen Gao, Suddhasatwa Basu, Zhiwei Hu, Doron Aurbach, Peter G Bruce, Malachi Noked
A critical current challenge in the development of all-solid-state lithium batteries (ASSLBs) is reducing the cost of fabrication without compromising the performance. Here we report a sulfide ASSLB based on a high-energy, Co-free LiNiO2 cathode with a robust outside-in structure. This promising cathode is enabled by the high-pressure O2 synthesis and subsequent atomic layer deposition of a unique ultrathin LixAlyZnzOδ protective layer comprising a LixAlyZnzOδ surface coating region and an Al and Zn near-surface doping region. This high-quality artificial interphase enhances the structural stability and interfacial dynamics of the cathode as it mitigates the contact loss and continuous side reactions at the cathode/solid electrolyte interface. As a result, our ASSLBs exhibit a high areal capacity (4.65 mAh cm−2), a high specific cathode capacity (203 mAh g−1), superior cycling stability (92% capacity retention …
Show moreOct 2024 • arXiv preprint arXiv:2410.22900
Aabhaas Vineet Mallik, Loris Maria Cangemi, Amikam Levy, Emanuele G Dalla Torre
Gate-based quantum computers are an innovative tool for experimentally studying the core principles of quantum mechanics. This work presents the first observation of quantum anomalous heat flow between two qubits and investigates the role of mid-circuit measurements in this context. Using mid-circuit measurements, we designed quantum circuits that violate the semi-classical heat flow bound, witnessing negativities in the underlying Kirkwood-Dirac quasiprobability distribution, which indicates the presence of quantum correlations between the subsystems. Mid-circuit measurements, crucial for probing qubits during the experiment, enabled these observations but also introduced disturbances, such as energy leakage, leading to deviations from theoretical predictions. We modeled these noise effects, providing insight into the limitations of current mid-circuit measurement techniques.
Show moreOct 2024 • Cells
Basel Obied, Stephen Richard, Alon Zahavi, Dror Fixler, Olga Girshevitz, Nitza Goldenberg-Cohen
Cobalt toxicity is difficult to detect and therefore often underdiagnosed. The aim of this study was to explore the pathophysiology of cobalt-induced oxidative stress in the brain and its impact on structure and function. Thirty-five wild-type C57B16 mice received intraperitoneal cobalt chloride injections: a single high dose with evaluations at 24, 48, and 72 h (n = 5, each) or daily low doses for 28 (n = 5) or 56 days (n = 15). A part of the 56-day group also received minocycline (n = 5), while 10 mice served as controls. Behavioral changes were evaluated, and cobalt levels in tissues were measured with particle-induced X-ray emission. Brain sections underwent magnetic resonance imaging (MRI), electron microscopy, and histological, immunohistochemical, and molecular analyses. High-dose cobalt caused transient illness, whereas chronic daily low-dose administration led to long-term elevations in cobalt levels …
Show moreOct 2024 • ACS Energy Letters
Hyungjin Lee, Amey Nimkar, Netanel Shpigel, Daniel Sharon, Seung-Tae Hong, Doron Aurbach, Munseok S Chae
Rechargeable manganese batteries hold promise for large-scale energy storage due to the abundance and eco-friendly nature of manganese. A key challenge is developing cathode materials capable of reversibly inserting Mn ions with a high specific capacity. Here, we demonstrate that perylene-3,4,9,10-tetracarboxylic dianhydride electrodes efficiently and reversibly insert Mn2+ ions in 3 M MnCl2 aqueous electrolyte solutions. Leveraging the carbonyl groups and the π-electron configuration, such compounds can serve as robust redox centers, facilitating reversible interactions with divalent ions such as Mn2+. Through comprehensive studies involving electrochemistry, elemental analyses, spectroscopy, and structural analysis, we explored these systems and found them as promising anode materials for Mn batteries. Demonstrating excellent Mn storage capabilities, such molecules could attain a reversible …
Show moreOct 2024 • 244th ECS Meeting (October 8-12, 2023)
Tao Hu, Yan Lin, Pekka Tynjälä, Shubo Wang, Gayathri Peta, Harishchandra Singh, Doron Aurbach, Ulla Lassi
Oct 2024 • arXiv preprint arXiv:2410.07034
H Girin, S Bittner, X Checoury, D Decanini, B Dietz, A Grigis, C Lafargue, J Zyss, C Xu, P Sebbah, M Lebental
Classical and wave properties of pseudosphere-shape microlasers are investigated through experiments and numerical simulations. These pseudosphere microlasers are surface-like organic microlasers with constant negative curvature, which were fabricated with high optical quality by direct laser writing. It is shown that they behave, in many ways, similar to two-dimensional flat disks, regardless of the different Gaussian curvature of the two systems. Indeed, it is evidenced that, due to rotational symmetry, the pseudosphere is an integrable system with marginally stable dynamics.
Show moreOct 2024 • Chirality
Daniel Vasiliev, Shay Tirosh, Assaf Ben‐Moshe
The interface between chirality and crystallization and mechanisms by which chirality propagates from crystal structure to overall shapes of crystals are a key topic in crystallography and stereochemistry. Recently, nanocrystals attracted attention as useful model systems for this kind of studies. Specifically, tellurium nanocrystals have been used to address questions on relations between chirality of the crystal structure and that of the overall shape. Previous studies of this system did not offer a comprehensive shape diagram and did not survey all the factors that determine whether shapes that form are chiral or not. In the current report, the distribution of chiral and achiral shapes in this system as a function of different physical and chemical parameters is determined experimentally. It is shown that there is a common logic for formation of chiral shapes, that is, growth at conditions that favor the growth of more reactive …
Show moreOct 2024 • International Journal of Molecular Sciences 25 (20), 11268, 2024
Odelia Orbaum-Harel, Ronit Sarid
The UL24 protein family, conserved across all subfamilies of Orthoherpesviridae, plays diverse and significant roles in viral replication, host–virus interactions and pathogenesis. Understanding the molecular mechanisms and interactions of UL24 proteins is key to unraveling the complex interplay between herpesviruses and their hosts. This review provides a comparative and comprehensive overview of current knowledge on UL24 family members, including their conservation, expression patterns, cellular localization, and functional roles upon their expression and during viral infection, highlighting their significance in herpesvirus biology and their potential functions.
Show moreOct 2024 • arXiv preprint arXiv:2410.11264
Nirman Chakraborty, Adi Harchol, Azhar Abu-Hariri, Rajesh Kumar Yadav, Muhamed Dawod, Diksha Prabhu Gaonkar, Kusha Sharma, Anna Eyal, Yaron Amouyal, Doron Naveh, Efrat Lifshitz
Intercalation is a robust method for tuning the physical properties of a vast number of van der Waals (vdW) materials. However, the prospects of using intercalation to modify magnetism in vdWs systems and the associated mechanisms have not been investigated adequately. In this work, we modulate magnetic order in an XY antiferromagnet NiPS3 single crystals by introducing pyridine molecules into the vdWs gap under different thermal conditions. X-ray diffraction measurements indicated pronounced changes in the lattice parameter beta, while magnetization measurements at in-plane and out-of-plane configurations exposed reversal trends in the crystals Neel temperatures through intercalation-de-intercalation processes. The changes in magnetic ordering were also supported by three-dimensional thermal diffusivity experiments. The preferred orientation of the pyridine dipoles within vdW gaps was deciphered via polarized Raman spectroscopy. The results highlight the relation between the preferential alignment of the intercalants, thermal transport, and crystallographic disorder along with the modulation of anisotropy in the magnetic order. The theoretical concept of double-exchange interaction in NiPS3 was employed to explain the intercalation-induced magnetic ordering. The study uncovers the merit of intercalation as a foundation for spin switches and spin transistors in advanced quantum devices.
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