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2024

Structure–Function Correlation in Cobalt-Induced Brain Toxicity. Cells 2024, 13, 1765

B Obied, S Richard, A Zahavi, D Fixler, O Girshevitz, N Goldenberg-Cohen

Cobalt toxicity is difficult to detect and therefore often underdiagnosed. The aim of this study was to explore the pathophysiology of cobalt-induced oxidative stress in the brain and its impact on structure and function. Thirty-five wild-type C57B16 mice received intraperitoneal cobalt chloride injections: a single high dose with evaluations at 24, 48, and 72 h (n= 5, each) or daily low doses for 28 (n= 5) or 56 days (n= 15). A part of the 56-day group also received minocycline (n= 5), while 10 mice served as controls. Behavioral changes were evaluated, and cobalt levels in tissues were measured with particle-induced X-ray emission. Brain sections underwent magnetic resonance imaging (MRI), electron microscopy, and histological, immunohistochemical, and molecular analyses. High-dose cobalt caused transient illness, whereas chronic daily low-dose administration led to longterm elevations in cobalt levels accompanied by brain inflammation. Significant neurodegeneration was evidenced by demyelination, increased blood–brain barrier permeability, and mitochondrial dysfunction. Treated mice exhibited extended latency periods in the Morris water maze test and heightened anxiety in the open field test. Minocycline partially mitigated brain injury. The observed signs of neurodegeneration were dose-and time-dependent. The neurotoxicity after acute exposure was reversible, but the neurological and functional changes following chronic cobalt administration were not.

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2024 • Journal of Materials Chemistry A

Unveiling the structural integrity of tunnel-type Na 0.44 MnO 2 cathode for sodium ion battery

Sankalpita Chakrabarty, Javeed Ahmad Dar, Akanksha Joshi, Arad Paperni, Sarah Taragin, Ananya Maddegalla, Gopalakrishnan Sai Gautam, Ayan Mukherjee, Malachi Noked

Tunnel-type Na0.44MnO2 (tt-NMO) is a promising cathode for sodium ion battery having excellent structural stability, diffusion kinetics, and low cost. However, this cathode is reported to suffer from low initial charge capacity (e.g., ≤60 mA h g−1) due to the limited accessibility of sodium ion extraction (0.22–0.24 Na+ per formula unit) from the structure, which hinders the practical viability of this material in a full battery cell. In this study, we report a tailored tt-NMO structure, synthesized using a two-step facile and scalable process, with >95% yield. Our tt-NMO demonstrated a 1st charge capacity of 110 mA h g−1, followed by a discharge capacity of 115 mA h g−1 within the potential window of 4–1.7 V versus Na/Na+. The long-term cycling performance at 0.5C rate and 1C rate (1C = 120 mA h g−1) shows excellent structural integrity for over 400 cycles with >75% capacity retention. We show experimentally and support it …

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2024 • bioRxiv

Multigenerational Proteolytic Inactivation of Restriction Upon Subtle Genomic Hypomethylation

Esther Shmidov, Alexis Villani, Senen D Mendoza, Ellay Avihu, Ilana Lebenthal-Loinger, Sarit Karako-Lampert, Sivan Shoshani, Chang Ye, Yiding Wang, Hao Yan, Weixin Tang, Joseph Bondy-Denomy, Ehud Banin

Restriction-modification (R-M) systems, present in most bacterial genomes, protect against phage infection by detecting and degrading invading foreign DNA. However, like many prokaryotic anti-phage systems, R-M systems pose a significant risk of auto-immunity, exacerbated by the presence of hundreds to thousands of potential cleavage sites in the bacterial genome. In Pseudomonas aeruginosa, restriction inactivation upon growth at high temperatures was previously described, however, which system is being inactivated, the underlying mechanism, as well as the timing of recovery, remain unknown. Here, we report that P. aeruginosa Type I methyltransferase (HsdMS) and restriction endonuclease (HsdR) components are degraded by two Lon-like proteases when replicating above 41 °C, which induces partial genome hypomethylation and simultaneously prevents self-targeting, respectively. Interestingly, upon return to 37 °C, methyltransferase activity returns gradually, with restriction activity not fully recovering for over 60 bacterial generations, representing the longest bacterial memory to our knowledge. Forced expression of HsdR over the first 45 generations is toxic, demonstrating the fitness benefit of HsdR inactivation. Our findings demonstrate that type I R-M is tightly regulated post-translationally with a remarkable memory effect to ensure genomic stability and emphasize the importance of mitigating auto-toxicity for bacterial defense systems.

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2024

PUBLISHING GROUP

Ariel Ashkenazy, Nadav Shabairou, André Stefanov, Peng Gao, Dror Fixler, Eliahu Cohen, Zeev Zalevsky

The time-multiplexing super resolution concept requires post-processing for extracting the super-resolved image. Moreover, to perform the post-processing image restoration one needs to know the exact high-resolution encoding pattern. Both of these limiting conditions are overcome by the method and experiment reported in this Letter.

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2024 • Journal of Materials Chemistry A

Unveiling the structural integrity of tunnel-type Na 0.44 MnO 2 cathode for sodium ion battery

Sankalpita Chakrabarty, Javeed Ahmad Dar, Akanksha Joshi, Arad Paperni, Sarah Taragin, Ananya Maddegalla, Gopalakrishnan Sai Gautam, Ayan Mukherjee, Malachi Noked

Tunnel type Na0.44MnO2 (tt-NMO) is a promising cathode for sodium-ion batteries having excellent structural stability, diffusion kinetics, and low cost. However, this cathode is reported to suffer from low initial charge capacity (e.g. ≤60 mA h g-1) due to limited accessibility of sodium ion extraction (0.22 ̶ 0.24 Na+ per formula unit) from the structure which hinders the practical viability of this material in a full battery cell. In this study, we report a tailored tt-NMO structure, synthesized using a two-step facile and scalable process, with >95% yield. Our tt-NMO demonstrated a 1st charge capacity of 110 A h g-1 followed by a 115 mA h g-1 discharge capacity within the potential window of 4 ̶ 1.7V versus Na/Na+. The long-term cycling performance at 0.5C rate and 1C rate (1C = 120 mA h g-1) shows excellent structural integrity for over 400 cycles with >75% capacity retention. We show experimentally and support it by …

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2024

Analyzing the effect of doping concentration in split-well resonant-phonon terahertz quantum cascade lasers: supplement

SHIRAN LEVY, NATHALIE LANDER GOWER, SILVIA PIPERNO, SADHVIKAS J ADDAMANE, JOHN L RENO, ASAF ALBO

Analyzing the effect of doping concentration in split-well resonant-phonon terahertz quantum cascade lasers: supplement Page 1 Supplemental Document Analyzing the effect of doping concentration in split-well resonant-phonon terahertz quantum cascade lasers: supplement SHIRAN LEVY,1,2,† NATHALIE LANDER GOWER,1,2,† SILVIA PIPERNO,1,2 SADHVIKAS J. ADDAMANE,3 JOHN L. RENO,3 AND ASAF ALBO 1,2,∗ 1Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002, Israel 2The Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan 5290002, Israel 3Center for Integrated Nanotechnologies, Sandia National Laboratories, MS 1303, Albuquerque, New Mexico 87185-1303, USA †These authors contributed equally to this work ∗ asafalbo@gmail.com This supplement published with Optica Publishing Group on 18 March 2024 by The Authors under the terms of the …

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2024 • bioRxiv

Scattering-Based Super-Resolution Optical Fluctuation Imaging

Shimon Yudovich, Gregor Posnjak, Lior Shani, Eti Teblum, Tim Liedl, Jörg Enderlein, Shimon Weiss

Super-resolution optical imaging has become a prominent tool in life and material sciences, allowing one to decipher structures at increasingly greater spatial detail. Among the utilized techniques in this field, super-resolution optical fluctuation imaging (SOFI) has proved to be a valuable approach. A major advantage of SOFI is its less restrictive requirements for generating super-resolved images of neighboring nanostructures or molecules, as it only assumes that the detected fluctuating light from neighboring emitters is statistically uncorrelated, but not necessarily separated in time. While most optical super-resolution microscopies depend on signals obtained from fluorescence, they are limited by photobleaching and phototoxicity. An alternative source for optical signals can be acquired by detecting the light scattered from molecules or nanoparticles. However, the application of coherent scattering-based imaging modalities for super-resolution imaging has been considerably limited compared to fluorescence-based modalities. Here, we develop scattering-based super-resolution optical fluctuation imaging (sSOFI), where we utilize the rotation of anisotropic particles as a source of fluctuating optical signals. We discuss the differences in the application of SOFI algorithms for coherent and incoherent imaging modalities, and utilize interference microscopy to demonstrate super-resolution imaging of rotating nanoparticle dimers. We present a theoretical analysis of the relevant model systems, and discuss the possible effects of cusp artifacts and electrodynamic coupling between nearby nano-scatterers. Finally, we apply sSOFI as a label-free novelty …

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2024 • Frontiers in Molecular Neuroscience

Perspectives in neuroscience: mechanical forces for the modulation of axonal mechanics and nerve regeneration

Vittoria Raffa, Orit Shefi, Alessandro Falconieri

Nerve injury is a pervasive clinical issue with profound social and economic implications worldwide. Despite the availability of different therapeutic schemes for stimulating nerve regeneration, these treatments have not yielded significant benefits for patients, especially for injuries of the central nervous system (CNS). Consequently, it is essential to return to basic research to explore new avenues and develop more effective solutions for nerve repair and regeneration. This has encouraged scientific and public interest in the research aimed at understanding and promoting axon regeneration postinjury. Historically, chemical signaling in axon growth has long been recognized, but recent attention has shifted toward the role of the biophysical environment and axonal mechanics. Mechanical force plays a key role in the morphogenesis of the CNS, modulating neural cell (neurons and precursors) navigation and …

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2024 • Small Structures

Magnesium Ions Storage in Molybdenum Oxide Structures Examined as a Promising Cathode Material for Rechargeable Magnesium Batteries

Dedy Setiawan, Hyungjin Lee, Hyeri Bu, Doron Aurbach, Seung-Tae Hong, Munseok S Chae

Magnesium batteries have attracted considerable attention as a promising technology for future energy storage because of their capability to undergo multiple charging reactions. However, most oxide materials utilized as hosts for magnesium batteries do not perform well at room temperature or in nonaqueous electrolytes. Herein, a host material, Na0.04MoO3·(H2O)0.49 is successfully developed through the chemical reduction of alpha‐MoO3, which enables magnesium storage reaction in a 0.5 m Mg(ClO4)2/acetonitrile electrolyte at 25 °C. Electrochemical analysis reveals that the cathode material possesses a discharge capacity of 157.4 mAh g−1 at a 0.2 C rate. The Na0.04MoO3·(H2O)0.49 cathode material also exhibits a capacity retention of 93.4% after 100 cycles compared to the first cycle at a 2 C rate, with an average discharge voltage of −0.474 V versus activated carbon (≈2.16 V estimated …

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2024 • Journal of Materials Chemistry C

From monolayer to thin films: engineered bandgap in CVD grown Bi 2 Se (3− x) S x topological insulator alloys

Michal Poplinger, Dimitris Kaltsas, Chen Stern, Pilkhaz Nanikashvili, Adi Levi, Rajesh K Yadav, Sukanta Nandi, Yuxiao Wu, Avinash Patsha, Ariel Ismach, Ashwin Ramasubramaniam, Amaia Pesquera, Amaia Zurutuza, Ioanna Zergioti, Leonidas Tsetseris, Tomer Lewi, Doron Naveh

Topological insulators, a class of materials possessing bulk bandgap and metallic surface states with a topological nontrivial symmetry, are considered promising candidates for emerging quantum and optoelectronic applications. However, achieving scalable growth and control over the parameters including thickness, carrier density, bulk bandgap, and defect density remains a challenge in realizing such applications. In this work, we show the scalable growth of topological insulator alloys Bi2Se(3−x)Sx and demonstrate composition-tunable bandgap, using chemical vapor deposition (CVD). A bandgap increase of up to ∼40% at a sulfur concentration of ∼15% is demonstrated. Correspondingly, the real part (n) of the refractive index is reduced in the alloy by ∼25% relative to that of Bi2Se3. Additionally, electronic transport measurements indicate a bulk p-type doping and field-effect tunable metallic surface states …

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2024 • ACS Energy Letters

π-Electron-Assisted Charge Storage in Fused-Ring Aromatic Carbonyl Electrodes for Aqueous Manganese-Ion Batteries

Hyungjin Lee, Amey Nimkar, Netanel Shpigel, Daniel Sharon, Seung-Tae Hong, Doron Aurbach, Munseok S Chae

Rechargeable manganese batteries hold promise for large-scale energy storage due to the abundance and eco-friendly nature of manganese. A key challenge is developing cathode materials capable of reversibly inserting Mn ions with a high specific capacity. Here, we demonstrate that perylene-3,4,9,10-tetracarboxylic dianhydride electrodes efficiently and reversibly insert Mn2+ ions in 3 M MnCl2 aqueous electrolyte solutions. Leveraging the carbonyl groups and the π-electron configuration, such compounds can serve as robust redox centers, facilitating reversible interactions with divalent ions such as Mn2+. Through comprehensive studies involving electrochemistry, elemental analyses, spectroscopy, and structural analysis, we explored these systems and found them as promising anode materials for Mn batteries. Demonstrating excellent Mn storage capabilities, such molecules could attain a reversible …

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2024 • International Journal of Biological Sciences

Towards a “Testis in a Dish”: Generation of Mouse Testicular Organoids that Recapitulate Testis Structure and Expression Profiles

Aviya Stopel, Cheli Lev, Stav Dahari, Or Adibi, Leah Armon, Nitzan Gonen

The testis is responsible for sperm production and androgen synthesis. Abnormalities in testis development and function lead to disorders of sex development and male infertility. Currently, no in vitro system exists for modelling the testis. Here, we generated testis organoids from neonatal mouse primary testicular cells using transwell inserts and show that these organoids generate tubule-like structures and cellular organization resembling that of the in vivo testis. Gene expression analysis of organoids demonstrates a profile that recapitulates that observed in in vivo testis. Embryonic testicular cells, but not adult testicular cells are also capable of forming organoids. These organoids can be maintained in culture for 8-9 weeks and shows signs of entry into meiosis. We further developed defined media compositions that promote the immature versus mature Sertoli cell and Leydig cell states, enabling organoid …

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2024 • Nanoscale

Tuning the performance of Fe–porphyrin aerogel-based PGM-free oxygen reduction reaction catalysts in proton exchange membrane fuel cells

Yeela Persky, Yan Yurko, Rifael Z Snitkoff-Sol, Noam Zion, Lior Elbaz

Fe–N–C catalysts are currently the leading candidates to replace Pt-based catalysts for the oxygen reduction reaction in proton exchange membrane fuel cells. To maximize their activity, it is necessary to optimize their structure to allow high active site density on one hand, and hierarchical porous structure that will allow good mass transport of reactants and products to and from the active sites on the other hand. Hence, the hierarchical structure of the catalyst plays an important role in the balance between the electrochemical active site density and the mass transport resistance. Aerogels were synthesized in this work to study the interplay between these two parameters. Aerogels are covalent organic frameworks with ultra-low density, high porosity, and large surface area. The relative ease of tuning the composition and pore structure of aerogels make them prominent candidates for catalysis. Herein, we report on a …

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2024 • Nanoscale

Polyetherimide (PEI) nanocomposite with WS 2 nanotubes

Dotan Babai, Iddo Pinkas, Doron Naveh, Reshef Tenne

Nanocomposite materials, integrating nanoscale additives into a polymer matrix, hold immense promise for their exceptional property amalgamation. This study delves into the fabrication and characterization of polyetherimide (PEI) nanocomposite strings fortified with multiwall WS2 nanotubes. The manufacturing process capitalizes on the preferential alignment of WS2 nanotubes along the string axis, corroborated by scanning electron microscopy (SEM). Mechanical measurements unveil a remarkable acceleration of strain hardening in the nanocomposite strings, chiefly attributed to the WS2 nanotubes. Structural analyses via X-ray diffraction (XRD) and wide-angle X-ray scattering (WAXS) reveal intriguing structural alterations during tensile deformation. Notably a semi-crystalline framework ~100 nm in diameter surrounding the WS2 nanotubes emerges, which is stabilized by the π-π interactions between the PEI …

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2024 • Advanced Quantum Technologies

Photon Number Splitting Attack–Proposal and Analysis of an Experimental Scheme

Ariel Ashkenazy, Yuval Idan, Dor Korn, Dror Fixler, Barak Dayan, Eliahu Cohen

Photon‐number‐splitting (PNS) is a well‐known theoretical attack on quantum key distribution (QKD) protocols that employ weak coherent states produced by attenuated laser pulses. However, beyond the fact that it has not yet been demonstrated experimentally, its plausibility and effect on quantum bit error rate are questioned. In this work, an experimental scheme is presented for PNS attack employing demonstrated technological capabilities, specifically a single‐photon Raman interaction (SPRINT) in a cavity‐enhanced three‐level atomic system. Several aspects of the proposed implementation are addressed, analytically and simulatively, and the eavesdropper's information gain by the attack is calculated. Furthermore, it is analytically shown that the scheme results in a small (yet non‐zero) quantum bit error rate, and a comparison to purely theoretical analyses in the literature is presented. It is believed that the …

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2024 • Nanoscale Advances

Impact of synthesis methods on the functionality of antibody-conjugated gold nanoparticles for targeted therapy

Adi Anaki, Chen Tzror-Azankot, Menachem Motiei, Tamar Sadan, Rachela Popovtzer

Gold nanoparticles (GNPs) are emerging as promising modular platforms for antibody-based cancer therapeutics. Their unique physiochemical properties enable efficient binding of multiple antibodies upon a single particle, thereby enhancing therapeutic potential. However, the effect of widely used synthesis techniques on the characteristics and functionality of antibody-GNP platforms has yet to be fully understood. Here, we investigated the effect of key synthesis approaches, namely, covalent binding and physical adsorption, on the properties and anti-cancer functionality of antibody-coated GNPs. By carefully manipulating synthesis variables, including antibody mass in reaction and linker compositions, we revealed a direct impact of these synthesis methods on antibody binding efficiency and anti-cancer functionality. We found that covalent binding of antibodies to GNPs generated a platform with increased …

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2024 • physica status solidi (a)

Photo‐Induced Evolution of Randomly Rough Surfaces of Amorphous Chalcogenide Films

Yuri Kaganovskii, Valentin Freilikher, Michael Rosenbluh

Photo‐induced evolution of statistically rough surfaces of amorphous chalcogenide films As20Se80 at room temperature has been studied by measuring the angular dependence of the intensity of light scattered from a surface illuminated by cw laser (λ = 660 nm). The interpretation of the scattering data based on the resonant scattering theory enabled to confirm unequivocally the diffusion mechanism of PI mass transfer. It was detected that the change of the amplitude of a spatial harmonic in the roughness spectra strongly depended on its period Λ. During illumination, the amplitude increased at Λ > Λ∗, whereas harmonics with Λ < Λ∗ decreased. Λ∗ , which corresponds to zero evolution rate. was found to be 6.7 μm. In accordance with our theoretical prediction, both growth and decrease were exponential with the rates depended on Λ. As the result, the roughness with initial rms height of 50 ‐ 70 nm transformed …

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2024 • bioRxiv

Multigenerational Proteolytic Inactivation of Restriction Upon Subtle Genomic Hypomethylation

Esther Shmidov, Alexis Villani, Senen D Mendoza, Ellay Avihu, Ilana Lebenthal-Loinger, Sarit Karako-Lampert, Sivan Shoshani, Chang Ye, Yiding Wang, Hao Yan, Weixin Tang, Joseph Bondy-Denomy, Ehud Banin

Restriction-modification (R-M) systems, present in most bacterial genomes, protect against phage infection by detecting and degrading invading foreign DNA. However, like many prokaryotic anti-phage systems, R-M systems pose a significant risk of auto-immunity, exacerbated by the presence of hundreds to thousands of potential cleavage sites in the bacterial genome. In Pseudomonas aeruginosa, restriction inactivation upon growth at high temperatures was previously described, however, which system is being inactivated, the underlying mechanism, as well as the timing of recovery, remain unknown. Here, we report that P. aeruginosa Type I methyltransferase (HsdMS) and restriction endonuclease (HsdR) components are degraded by two Lon-like proteases when replicating above 41 °C, which induces partial genome hypomethylation and simultaneously prevents self-targeting, respectively. Interestingly, upon return to 37 °C, methyltransferase activity returns gradually, with restriction activity not fully recovering for over 60 bacterial generations, representing the longest bacterial memory to our knowledge. Forced expression of HsdR over the first 45 generations is toxic, demonstrating the fitness benefit of HsdR inactivation. Our findings demonstrate that type I R-M is tightly regulated post-translationally with a remarkable memory effect to ensure genomic stability and emphasize the importance of mitigating auto-toxicity for bacterial defense systems.

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2024 • Chemistry‐Methods 4 (3), e202300039, 2024

Exploring the Capability of Framework Materials to Improve Cathodes’ Performance for High‐energy Lithium‐ion Batteries

Rajashree Konar, Sandipan Maiti, Boris Markovsky, Hadar Sclar, Doron Aurbach

Lithiated transition metal oxides are the most important cathode materials for lithium‐ion batteries. Many efforts have been devoted in recent years to improving their energy density, stability, and safety, as demonstrated by thousands of publications. However, the commercialization of several promising materials is limited due to obstacles like stability limitations. To overcome the limitations of energetically high‐voltage or high‐capacity cathode materials, unconventional solutions for their surface engineering were suggested; among them, metal–organic frameworks (MOFs) and zeolites have been employed. MOFs possess favorable characteristics for stabilization goals, including manageable structures, topological control, high porosity, large surface area, and low density. This review article explores promising strategies for improving the electrochemical behavior of favorable cathode materials through surface …

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2024 • bioRxiv

HLH-30/TFEB rewires the chaperone network to promote proteostasis under conditions of Coenzyme A and Iron-Sulfur Cluster Deficiency

Rewayd Shalash, Mor Levi-Ferber, Henrik von Chrzanowski, Mohammad Khaled Atrash, Yaron Shav-Tal, Sivan Henis-Korenblit

The maintenance of a properly folded proteome is critical for cellular function and organismal health, and its age-dependent collapse is associated with a wide range of diseases. Here, we find that despite the central role of Coenzyme A as a molecular cofactor in hundreds of cellular reactions, limiting Coenzyme A levels in C. elegans and in human cells, by inhibiting the conserved pantothenate kinase, promotes proteostasis. Impairment of the cytosolic iron-sulfur clusters formation pathway, which depends on Coenzyme A, similarly promotes proteostasis and acts in the same pathway. Proteostasis improvement by Coenzyme A/iron-sulfur cluster deficiencies are dependent on the conserved HLH-30/TFEB transcription factor. Strikingly, under these conditions, HLH-30 promotes proteostasis by potentiating the expression of select chaperone genes providing a chaperone-mediated proteostasis shield, rather than by its established role as an autophagy and lysosome biogenesis promoting factor. This reflects the versatile nature of this conserved transcription factor, that can transcriptionally activate a wide range of protein quality control mechanisms, including chaperones and stress response genes alongside autophagy and lysosome biogenesis genes. These results highlight TFEB as a key proteostasis-promoting transcription factor and underscore it and its upstream regulators as potential therapeutic targets in proteostasis-related diseases

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2024 • Journal of Physics: Conference Series

Journal of Physics: Conference Series

Haikun Jia, Doron Aurbach, A New, Jupiter Mesoscale Long-lived, Amy A Simon, Ricardo Hueso, Peio Iñurrigarro

Preface - IOPscience Skip to content IOP Science home Accessibility Help Search Journals Journals list Browse more than 100 science journal titles Subject collections Read the very best research published in IOP journals Publishing partners Partner organisations and publications Open access IOP Publishing open access policy guide IOP Conference Series Read open access proceedings from science conferences worldwide Books Publishing Support Login IOPscience login / Sign Up Close Click here to close this panel. Search all IOPscience content Article Lookup Select journal (required) Volume number: Issue number (if known): Article or page number: Journal of Physics: Conference Series Purpose-led Publishing, find out more. Purpose-led Publishing logo. Purpose-led Publishing is a coalition of three not-for-profit publishers in the field of physical sciences: AIP Publishing, the American Physical Society …

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