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Jun 2023 • arXiv preprint arXiv:2206.11783

Kirkwood-Dirac quasiprobability approach to the statistics of incompatible observables

Matteo Lostaglio, Alessio Belenchia, Amikam Levy, Santiago Hernández-Gómez, Nicole Fabbri, Stefano Gherardini

Recent work has revealed the central role played by the Kirkwood-Dirac quasiprobability (KDQ) as a tool to encapsulate non-classical features in the context of condensed matter physics (scrambling, dynamical phase transitions) metrology (standard and post-selected), thermodynamics (power output and fluctuation theorems), foundations (contextuality, anomalous weak values) and more. Given the growing relevance of the KDQ across the quantum sciences, the aim of this work is two-fold: first, we clarify the role played by quasiprobabilities in characterising dynamical fluctuations in the presence of measurement incompatibility, and highlight how the KDQ naturally underpins and unifies quantum correlators, quantum currents, Loschmidt echoes and weak values; second, we discuss several schemes to access the KDQ and its non-classicality features, and assess their experimental feasibility in NMR and solid-state platforms. Finally, we analyze the possibility of a `thermodynamics with quasiprobabilities' in the light of recent no-go theorems limiting traditional treatments.

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Jun 2023 • Molecules

Stable High-Capacity Elemental Sulfur Cathodes with Simple Process for Lithium Sulfur Batteries

Shunsuke Sawada, Hideki Yoshida, Shalom Luski, Elena Markevich, Gregory Salitra, Yuval Elias, Doron Aurbach

Lithium sulfur batteries are suitable for drones due to their high gravimetric energy density (2600 Wh/kg of sulfur). However, on the cathode side, high specific capacity with high sulfur loading (high areal capacity) is challenging due to the poor conductivity of sulfur. Shuttling of Li-sulfide species between the sulfur cathode and lithium anode also limits specific capacity. Sulfur-carbon composite active materials with encapsulated sulfur address both issues but require expensive processing and have low sulfur content with limited areal capacity. Proper encapsulation of sulfur in carbonaceous structures along with active additives in solution may largely mitigate shuttling, resulting in cells with improved energy density at relatively low cost. Here, composite current collectors, selected binders, and carbonaceous matrices impregnated with an active mass were used to award stable sulfur cathodes with high areal specific capacity. All three components are necessary to reach a high sulfur loading of 3.8 mg/cm2 with a specific/areal capacity of 805 mAh/g/2.2 mAh/cm2. Good adhesion between the carbon-coated Al foil current collectors and the composite sulfur impregnated carbon matrices is mandatory for stable electrodes. Swelling of the binders influenced cycling retention as electroconductivity dominated the cycling performance of the Li-S cells comprising cathodes with high sulfur loading. Composite electrodes based on carbonaceous matrices in which sulfur is impregnated at high specific loading and non-swelling binders that maintain the integrated structure of the composite electrodes are important for strong performance. This basic design can …

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Jun 2023 • Journal of hazardous materials

Soil adsorption and transport of lead in the presence of perovskite solar cell-derived organic cations

Arindam Mallick, Rene D Mendez Lopez, Gilboa Arye, David Cahen, Iris Visoly-Fisher

Perovskite photovoltaics offer a highly efficient and low-cost solar energy harvesting technology. However, the presence of lead (Pb) cations in photovoltaic halide perovskite (HaPs) materials is concerning, and quantifying the environmental hazard of accidental Pb2+ leaching into the soil is crucial for assessing the sustainability of this technology. Pb2+ from inorganic salts was previously found to remain in the upper soil layers due to adsorption. However, Pb-HaPs contain additional organic and inorganic cations, and competitive cation adsorption may affect Pb2+ retention in soils. Therefore, we measured, analyzed by simulations and report the depths to which Pb2+ from HaPs penetrates into 3 types of agricultural soil. Most of the HaP-leached Pb2+ is found to be retained already in the first cm of the soil columns, and subsequent rain events do not induce Pb2+ penetration below the first few cm of soil surface …

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Jun 2023 • Quantum 2.0, QTh3A. 2, 2023

Nanometric-scale phase contrast imaging with undetected x-ray photons

Haim Aknin, Sharon Shwartz

We show that a system using down conversion of x-ray photons into optical photons together with the concept of quantum imaging with undetected photons can provide nanoscale resolution even for radiation sensitive samples.

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Jun 2023 • Molecular Cell, 2023

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Job Dekker, Frank Alber, Sarah Aufmkolk, Brian J Beliveau, Benoit G Bruneau, Andrew S Belmont, Lacramioara Bintu, Alistair Boettiger, Riccardo Calandrelli, Christine M Disteche, David M Gilbert, Thomas Gregor, Anders S Hansen, Bo Huang, Danwei Huangfu, Reza Kalhor, Christina S Leslie, Wenbo Li, Yun Li, Jian Ma, William S Noble, Peter J Park, Jennifer E Phillips-Cremins, Katherine S Pollard, Susanne M Rafelski, Bing Ren, Yijun Ruan, Yaron Shav-Tal, Yin Shen, Jay Shendure, Xiaokun Shu, Caterina Strambio-De-Castillia, Anastassiia Vertii, Huaiying Zhang, Sheng Zhong

The four-dimensional nucleome (4DN) consortium studies the architecture of the genome and the nucleus in space and time. We summarize progress by the consortium and highlight the development of technologies for (1) mapping genome folding and identifying roles of nuclear components and bodies, proteins, and RNA, (2) characterizing nuclear organization with time or single-cell resolution, and (3) imaging of nuclear organization. With these tools, the consortium has provided over 2,000 public datasets. Integrative computational models based on these data are starting to reveal connections between genome structure and function. We then present a forward-looking perspective and outline current aims to (1) delineate dynamics of nuclear architecture at different timescales, from minutes to weeks as cells differentiate, in populations and in single cells, (2) characterize cis-determinants and trans-modulators of …

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Jun 2023 • ACS Applied Materials & Interfaces

Waste-Derived Sustainable Fluorescent Nanocarbon-Coated Breathable Functional Fabric for Antioxidant and Antimicrobial Applications

Poushali Das, Masoomeh Sherazee, Parham Khoshbakht Marvi, Syed Rahin Ahmed, Aharon Gedanken, Seshasai Srinivasan, Amin Reza Rajabzadeh

Hospital-acquired (nosocomial) infections account for the majority of adverse health effects during care delivery, placing an immense financial strain on healthcare systems around the world. For the first time, the present article provides evidence of a straightforward pollution-free technique to fabricate a heteroatom-doped carbon dot immobilized fluorescent biopolymer composite for the development of functional textiles with antioxidant and antimicrobial properties. A simple, facile, and eco-friendly approach was devised to prepare heteroatom-doped carbon dots from waste green tea and a biopolymer. The carbon dots showed an excitation-dependent emission behavior, and the XPS data unveiled that they are co-doped with nitrogen and sulfur. A facile physical compounding strategy was adopted to fabricate a carbon dot reinforced biopolymeric composite followed by immobilization onto the textile. The composite …

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Jun 2023 • ImmunoInformatics

AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets

William D Lees, Scott Christley, Ayelet Peres, Justin T Kos, Brian Corrie, Duncan Ralph, Felix Breden, Lindsay G Cowell, Gur Yaari, Martin Corcoran, Gunilla B Karlsson Hedestam, Mats Ohlin, Andrew M Collins, Corey T Watson, Christian E Busse, The AIRR Community

Analysis of an individual's immunoglobulin or T cell receptor gene repertoire can provide important insights into immune function. High-quality analysis of adaptive immune receptor repertoire sequencing data depends upon accurate and relatively complete germline sets, but current sets are known to be incomplete. Established processes for the review and systematic naming of receptor germline genes and alleles require specific evidence and data types, but the discovery landscape is rapidly changing. To exploit the potential of emerging data, and to provide the field with improved state-of-the-art germline sets, an intermediate approach is needed that will allow the rapid publication of consolidated sets derived from these emerging sources. These sets must use a consistent naming scheme and allow refinement and consolidation into genes as new information emerges. Name changes should be minimised, but …

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Jun 2023 • arXiv preprint arXiv:2306.13368

Subwavelength pulse focusing and perfect absorption in the Maxwell fish-eye

Gautier Lefebvre, Marc Dubois, Younes Achaoui, Ros Kiri, Mathias Fink, Sébastien Guenneau, Patrick Sebbah

Maxwell's fisheye is a paradigm for an absolute optical instrument with a refractive index deduced from the stereographic projection of a sphere on a plane. We investigate experimentally the dynamics of flexural waves in a thin plate with a thickness varying according to the Maxwell fisheye index profile and a clamped boundary. We demonstrate subwavelength focusing and temporal pulse compression at the image point. This is achieved by introducing a sink emitting a cancelling signal optimally shaped using a time-reversal procedure. Perfect absorption and outward going wave cancellation at the focus point are demonstrated. The time evolution of the kinetic energy stored inside the cavity reveals that the sink absorbs energy out of the plate ten times faster than the natural decay rate.

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Jun 2023 • arXiv preprint arXiv:2306.16110

Deep-subwavelength Phase Retarders at Mid-Infrared Frequencieswith van der Waals Flakes

Michael T Enders, Mitradeep Sarkar, Aleksandra Deeva, Maxime Giteau, Hanan Herzig Sheinfux, Mehrdad Shokooh-Saremi, Frank HL Koppens, Georgia T Papadakis

Phase retardation is a cornerstone of modern optics, yet, at mid-infrared (mid-IR) frequencies, it remains a major challenge due to the scarcity of simultaneously transparent and birefringent crystals. Most materials resonantly absorb due to lattice vibrations occurring at mid-IR frequencies, and natural birefringence is weak, calling for hundreds of microns to millimeters-thick phase retarders for sufficient polarization rotation. We demonstrate mid-IR phase retardation with flakes of -molybdenum trioxide (-MoO) that are more than ten times thinner than the operational wavelength, achieving 90 degrees polarization rotation within one micrometer of material. We report conversion ratios above 50% in reflection and transmission mode, and wavelength tunability by several micrometers. Our results showcase that exfoliated flakes of low-dimensional crystals can serve as a platform for mid-IR miniaturized integrated polarization control.

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Jun 2023 • Physical Review Letters

Ultrafast Temporal SU (1, 1) Interferometer

Sara Meir, Yuval Tamir, Hamootal Duadi, Eliahu Cohen, Moti Fridman

Interferometers are highly sensitive to phase differences and are utilized in numerous schemes. Of special interest is the quantum SU (1, 1) interferometer which is able to improve the sensitivity of classical interferometers. We theoretically develop and experimentally demonstrate a temporal SU (1, 1) interferometer based on two time lenses in a 4 f configuration. This temporal SU (1, 1) interferometer has a high temporal resolution, imposes interference on both time and spectral domains, and is sensitive to the phase derivative which is important for detecting ultrafast phase changes. Therefore, this interferometer can be utilized for temporal mode encoding, imaging, and studying the ultrafast temporal structure of quantum light.

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Jun 2023

Free electron laser stochastic spectroscopy revealing silicon bond softening dynamics

Jakub Szlachetko, Dario De Angelis, Emiliano Principi, Filippo Bencivenga, Daniele Fausti, Laura Foglia, Yishay Klein, Michele Manfredda, Riccardo Mincigrucci, Angela Montanaro, Emanuele Pedersoli, Jacopo Stefano Pelli Cresi, Giovanni Perosa, Kevin C Prince, Elia Razzoli, Sharon Shwartz, Alberto Simoncig, Simone Spampinati, Cristian Svetina, Alok Tripathi, Ivan A Vartanyants, Marco Zangrando, Flavio Capotondi

Time-resolved x-ray emission/absorption spectroscopy (Tr-XES/XAS) is an informative experimental tool sensitive to electronic dynamics in materials, widely exploited in diverse research fields. Typically, Tr-XES/XAS requires x-ray pulses with both a narrow bandwidth and subpicosecond pulse duration, a combination that in principle finds its optimum with Fourier transform-limited pulses. In this work, we explore an alternative experimental approach, capable of simultaneously retrieving information about unoccupied (XAS) and occupied (XES) states from the stochastic fluctuations of broadband extreme ultraviolet pulses of a free electron laser. We used this method, in combination with singular-value decomposition and Tikhonov regularization procedures, to determine the XAS/XES response from a crystalline silicon sample at the L2, 3 edge, with an energy resolution of a few tens of meV. Finally, we combined this spectroscopic method with a pump-probe approach to measure structural and electronic dynamics of a silicon membrane. Tr-XAS/XES data obtained after photoexcitation with an optical laser pulse at 390 nm allowed us to observe perturbations of the band structure, which are compatible with the formation of the predicted precursor state of a nonthermal solid-liquid phase transition associated with a bond softening phenomenon.

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Jun 2023 • arXiv preprint arXiv:2306.00528

Neuronal Cell Type Classification using Deep Learning

Ofek Ophir, Orit Shefi, Ofir Lindenbaum


Jun 2023 • Materials Today Chemistry

Thin coating of silica/polystyrene core-shell nano/microparticles with hierarchical morphology onto polymeric films for fabrication of superhydrophobic surfaces

S Hayne, S Margel

A novel coating process applied directly onto polymeric films offers a long-term alternative to short-term surface treatment of low surface energy polymers. In this paper, we report (i) an improved synthesis of a coating of raspberry-like particles directly onto polymeric surfaces and (ii) a novel method to obtain films with out-of-the ordinary superhydrophobic and self-cleaning properties. Inspired by the ‘lotus effect’ observed in nature, superhydrophobic surfaces were fabricated by combining dual-scale hierarchical coatings with low surface energy fluoroalkanes. Raspberry-like core-shell microparticles (MPs) composed of polystyrene (PS) core coated with silica (SiO2) shell (SiO2/PS) were synthesized by in situ dispersion polymerization of styrene directly on the surface of corona-treated polypropylene films. The PS MPs covered surface was then coated with SiO2 nano/microparticles (N/MPs) forming a hierarchical …

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Jun 2023 • Investigative Ophthalmology & Visual Science

RNA editing of mutations causing inherited retinal diseases using the cellular deaminase acting on RNA (ADAR) enzyme

Dror Sharon, Nina Schneider, Johanna Valensi, Ricky Steinberg, Amit Eylon, Eyal Banin, Erez Levanon, Shay Ben-Aroya

Purpose: Single nucleotide editing can be performed at the RNA level using the human deaminase acting on RNA (ADAR) enzyme and can serve as a tool for gene therapy of inherited diseases, including inherited retinal diseases (IRDs). ADAR-based RNA editing requires the delivery of an efficient guideRNA (gRNA) that is designed to recruit the endogenously expressed ADAR enzyme to a mutated RNA. Our aim is to design and test gRNAs that induce targeted ADAR editing for relatively common IRD-causing mutations including nonsense, missense, and splice-site mutations.Methods: A yeast model was used to identify candidate gRNAs for nonsense mutations by measuring yeast survival and percent editing using next generation sequencing (NGS). A fluorescence-expressing plasmid reporter system was used in HeLa cells overexpressing either ADAR1/2. The cells were transfected by a plasmid that includes …

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Jun 2023 • 2023 IEEE International Conference on Acoustics, Speech, and Signal …, 2023

Neuronal Cell Type Classification Using Locally Sparse Networks

Ofek Ophir, Orit Shefi, Ofir Lindenbaum

The brain is likely the most complex organ, given the variety of functions it controls, the number of cells it comprises, and their corresponding connectivity and diversity. Identifying and studying neurons, the major building blocks of the brain, is a crucial milestone and is essential for understanding brain functionality in health and disease. Recent developments in machine learning have provided advanced abilities for classifying neurons, mainly according to their morphology. This paper aims to provide an explainable deep-learning framework to classify neurons based on their electrophysiological activity. Our analysis is performed on data provided by the Allen Cell Types database. The data contains a survey of biological features derived from single-cell recordings from mice. Neurons are classified into subtypes based on Cre mouse lines using an inherently interpretable locally sparse deep neural network model …

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Jun 2023 • Preprints, 2023

Isothermal Titration Calorimetry: The Heat of Dilution, Racemization, and What Lies In Between

Matan Oliel, Yitzhak Mastai

Chiral interactions play a crucial role in both chemistry and biology. Understanding the behavior of chiral molecules and their interactions with other molecules is essential, and chiral interactions in solutions are particularly important for studying chiral compounds. Chirality influences the physical and chemical properties of molecules, including solubility, reactivity, and biological activity. In this work, we used Isothermal Titration Calorimetry (ITC), a powerful technique for studying molecular interactions, including chiral interactions in solutions. We conducted a series of ITC measurements to investigate the heat of dilution and the heat of racemization of several amino acids (Asn, His, Ser, Ala, Met, and Phe). We also performed ITC measurements under different solute concentrations and temperatures to examine the effects of these parameters on chiral interactions, as well as the heat of dilution and racemization. The results of our measurements indicated that the heat of dilution, specifically the interactions between the solvent (water) and solute (chiral molecules), had a significant impact compared to the chiral interactions in the solution, which were found to be negligible. This suggests that the interactions between chiral molecules and the solvent play a more dominant role in determining the overall behavior and properties of the system. By studying chiral interactions in solutions, we can gain valuable insights into the behavior of chiral compounds, which can have implications in various fields, including drug design, chemical synthesis, and biological processes.

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Jun 2023 • arXiv preprint arXiv:2306.16319

Statistics of long-range force fields in random environments: Beyond Holtsmark

Avraham Samama, Eli Barkai

Since the times of Holtsmark (1911), statistics of fields in random environments have been widely studied, for example in astrophysics, active matter, and line-shape broadening. The power-law decay of the two-body interaction, of the form , and assuming spatial uniformity of the medium particles exerting the forces, imply that the fields are fat-tailed distributed, and in general are described by stable L\'evy distributions. With this widely used framework, the variance of the field diverges, which is non-physical, due to finite size cutoffs. We find a complementary statistical law to the L\'evy-Holtsmark distribution describing the large fields in the problem, which is related to the finite size of the tracer particle. We discover bi-scaling, with a sharp statistical transition of the force moments taking place when the order of the moment is , where is the dimension. The high-order moments, including the variance, are described by the framework presented in this paper, which is expected to hold for many systems. The new scaling solution found here is non-normalized similar to infinite invariant densities found in dynamical systems.

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Jun 2023 • Journal of Power Sources

Zn-enriched cathode layer interface via atomic surface reduction of LiNi0. 5Mn1. 5O4: Computational and experimental insights

Shubham Garg, Sarah Taragin, Arka Saha, Olga Brontvein, Kevin Leung, Malachi Noked

Despite having the ability to deliver 650 W h kg−1 in addition to the impressive rate capability, superior thermal stability, and facilitated electronic and ionic lithium conduction, LiNi0.5Mn1.5O4 (LNMO) is far from commercial applications. LNMO suffers from irreversible electrolytic degradation on its surface under high voltage operations leading to capacity fading and poor battery life. Therefore, this work aims to improve the stability and electrochemical behavior of LNMO by creating a Zn-enriched cathode layer interface via eccentric and facile diethyl zinc-assisted atomic surface reduction (Zn-ASR). In-depth surface characterization tools and computational calculations demonstrates a conformal 7-8 nm thin Zn-O and C-O enriched layer encapsulating the cathode particles resulting from Zn-ASR. The intensive comparative electrochemical and spectroscopic analysis, indicates superior electrochemical performance of …

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Jun 2023 • arXiv preprint arXiv:2306.13621

Ergodic properties of Brownian motion under stochastic resetting

Eli Barkai, Rosa Flaquer-Galmes, Vicenç Méndez

We study ergodic properties of one-dimensional Brownian motion with resetting. Using generic classes of statistics of times between resets, we find respectively for thin/fat tailed distributions, the normalized/non-normalised invariant density of this process. The former case corresponds to known results in the resetting literature and the latter to infinite ergodic theory. Two types of ergodic transitions are found in this system. The first is when the mean waiting time between resets diverges, when standard ergodic theory switches to infinite ergodic theory. The second is when the mean of the square root of time between resets diverges and the properties of the invariant density are drastically modified. We then find a fractional integral equation describing the density of particles. This finite time tool is particularly useful close to the ergodic transition where convergence to asymptotic limits is logarithmically slow. Our study implies rich ergodic behaviors for this non-equilibrium process which should hold far beyond the case of Brownian motion analyzed here.

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Jun 2023 • Optics Continuum

Remote sensing of human skin temperature by AI speckle pattern analysis

Ofir Ben David, Yevgeny Beiderman, Sergey Agdarov, Yafim Beiderman, Zeev Zalevsky

Analysis of dynamic differential speckle patterns, scattered from human tissues illuminated by a laser beam, has been found by many researchers to be applicable for noncontact sensing of various biomedical parameters. The COVID-19 global pandemic brought the need for massive rapid-remote detection of a fever in closed public spaces. The existing non-contact temperature measurement methods have a significant tradeoff between the measurement distance and accuracy. This paper aims to prove the feasibility of an accurate temperature measurement system based on speckle patterns analysis, enabling the sensing of human temperature from an extended distance greater than allowed by the existing methods. In this study, we used speckle patterns analysis combined with artificial intelligence (AI) methods for human temperature extraction, starting with fever/no fever binary classification and continuing with …

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Jun 2023 • arXiv preprint arXiv:2306.16702

Monte Carlo Simulations for Ghost Imaging Based on Scattered Photons

RH Shukrun, S Shwartz

X-ray based imaging modalities are widely used in research, industry, and in the medical field. Consequently, there is a strong motivation to improve their performances with respect to resolution, dose, and contrast. Ghost imaging (GI) is an imaging technique in which the images are reconstructed from measurements with a single-pixel detector using correlation between the detected intensities and the intensity structures of the input beam. The method that has been recently extended to X-rays provides intriguing possibilities to overcome several fundamental challenges of X-ray imaging. However, understanding the potential of the method and designing X-ray GI systems pose challenges since in addition to geometric optic effects, radiation-matter interactions must be considered. Such considerations are fundamentally more complex than those at longer wavelengths as relativistic effects such as Compton scattering become significant. In this work we present a new method for designing and implementing GI systems using the particle transport code FLUKA, that rely on Monte Carlo (MC) sampling. This new approach enables comprehensive consideration of the radiation-matter interactions, facilitating successful planning of complex GI systems. As an example of an advanced imaging system, we simulate a high-resolution scattered photons GI technique.

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