BINA

Enhancing the reproducibility and comprehension of adaptive immune receptor repertoire sequencing (AIRR-seq) data analysis is critical for scientific progress. This study presents guidelines for reproducible AIRR-seq data analysis, and a collection of ready-to-use pipelines with comprehensive documentation. To this end, ten common pipelines were implemented using ViaFoundry, a user-friendly interface for pipeline management and automation. This is accompanied by versioned containers, documentation and archiving capabilities. The automation of pre-processing analysis steps and the ability to modify pipeline parameters according to specific research needs are emphasized. AIRR-seq data analysis is highly sensitive to varying parameters and setups; using the guidelines presented here, the ability to reproduce previously published results is demonstrated. This work promotes transparency …

Abstract Hypothesis Room Temperature Ionic Liquids (RTILs) bulk's molecular layering dominates their structure also at the RTIL/sapphire interface, increasing the layer spacing with the cationic alkyl chain length n. However, the negatively-charged sapphire surface compresses the layers, increases the layering range, and affects the intra-layer structure in yet unknown ways. Experiments X-ray reflectivity (XR) off the RTIL/sapphire interface, for a broad homologous RTIL series 1-alkyl-3-methylimidazolium bis (trifluoromethansulfonyl) imide, hitherto unavailable for any RTIL. Findings RTIL layers against the sapphire, exhibit two spacings: d a and d b. d a is n-varying, follows the behavior of the bulk spacing but exhibits a downshift, thus showing significant layer compression, and over twofold polar slab thinning. The latter suggests exclusion of anions from the interfacial region due to the negative sapphire charging …

We experimentally demonstrate the generation of chiral electron beams in an ultrafast transmission electron microscope without the necessity for chiral light or chiral-shaping structures, but by breaking mirror symmetry in the light-electron interaction.

The term defect tolerance (DT) is used often to rationalize the exceptional optoelectronic properties of Halide Perovskites, HaPs, and their devices. Even though DT lacked direct experimental evidence, it became fact in the field. DT in semiconductors implies tolerance to structural defects without the electrical and optical effects (e.g., traps), associated with such defects. We present first direct experimental evidence for DT in Pb HaPs by comparing the structural quality of 2D, 2D_3D, and 3D Pb HaP crystals with their optoelectronic characteristics using high sensitivity methods. Importantly, we get information from the material bulk, because we sample at least a few 100 nm, up to several micrometer, from the sample surface, which allows assessing intrinsic bulk (and not only surface) properties of HaPs. The results point to DT in 3D, to a lesser extent in 2D_3D, but not in 2D Pb HaPs. We ascribe such dimension dependent DT to the higher number of (near)neighboring species, available to compensate for structural defect effects in the 3D than in the 2D HaP crystals. Overall, our data provide an experimental basis to rationalize DT in Pb HaPs. These experiments and findings can guide the search for, and design of other materials with DT.

Chiral induction of chiral crystals attracts significant attention due to its implications for developing chiral materials and understanding mechanisms of symmetry breaking enantioselective crystallization of naturally chiral inorganic crystals and their potential use in chiral discrimination, which are, however, largely unexplored. Here, we investigate the chiral induction during the crystallization of naturally chiral Ag2CO3 crystals using arginine amino acid as the chiral inducer. The chiral nature of Ag2CO3 was evaluated using various techniques. Chiral crystals exhibited chiral selective binding toward different amino acid enantiomers. The significant selectivity in adsorption was confirmed by circular dichroism, high-performance liquid chromatography, and isothermal titration calorimetry. Understanding chiral induction in crystal growth may open avenues for the controlled assembly of chiral materials and the development …

We present free-electron imaging of sub-cycle spatio-temporal dynamics of 2D polariton wavepackets, demonstrating the first simultaneous time-, space-, and phase-resolved measurement of such phenomena, and resolving their novel features like vortex-anti-vortex singularities for record-low intensities.

Enhanced catalytic activity of oxygen evolution reaction (OER) catalysts is necessary to lower the cost of green hydrogen production. This study focuses on the use of a simple strategy of heat treatment to enhance the catalytic activity of NiFeOOH-based aerogels. The study shows that heat treatment of this aerogel at 150 °C leads to significant improvement in its catalytic activity, as evident in the staircase voltammetry results. To understand how heat treatment improves the catalytic activity, a DFT+U calculation was carried out on heat-treated and non-heat-treated catalysts. The calculation shows that the overpotential for OER decreases with heat treatment, which is related to the relative stability of the intermediates in heat-treated and non-heat-treated catalysts. Also, it has been found that heat treatment decreases work function, which might improve charge transfer and, thus, catalytic activity. Our calculations are in …

In the current work, we analyzed the origin of difference in stabilities among the germacrene A and hedycaryol-derived carbocations. This study focused on twelve hydrocarbons derived from germacrene A and twelve from hedycaryol, which can be divided into three groups: four molecules containing 6-6 bicyclic rings, four 5-7 bicyclic compounds with the carbocation being on the seven-membered ring and the remaining four 5-7 bicyclic compounds with the carbocation on the five-membered ring. The variations in energy within the groups of carbocations (ie, 6-6 and two kinds of 5-7 bicyclic carbocations) can be ascribed to intramolecular repulsion interactions, as seen from non-covalent interactions plots. Despite the structural similarities between germacrene A and hedycaryol cations, they possess a somewhat different stability trend. These differences are attributed to C+··· OH intramolecular interactions present in some hedycaryol cations, which are absent in the carbocations derived from germecrene A.

The COVID-19 pandemic highlighted the necessity of fast, sensitive, and efficient methods to test large populations for respiratory viruses. The “gold standard” molecular assays for detecting respiratory viruses, such as quantitative polymerase chain reaction (qPCR) and reverse transcription qPCR (RT-qPCR), rely on invasive swab samples and require time-consuming and labor-intensive extraction processes. Moreover, the turnaround time for RT-qPCR-based assays is too lengthy for rapid screening. Extraction-free saliva-based methods provide a non-invasive sampling process with a fast turnaround time and are suitable for high-throughput applications. However, when used with a standard RT-qPCR system, the absence of extraction significantly reduces the assays’ sensitivity. Here, using a novel optical modulation biosensing (OMB) platform, we developed a rapid and highly sensitive extraction-free saliva …

In recent years, steady progress has been made in synthesizing and characterizing engineered nanoparticles, resulting in several approved drugs and multiple promising candidates in clinical trials. Regulatory agencies such as the Food and Drug Administration and the European Medicines Agency released important guidance documents facilitating nanoparticle-based drug product development, particularly in the context of liposomes and lipid-based carriers. Even with the progress achieved, it is clear that many barriers must still be overcome to accelerate translation into the clinic. At the recent conference workshop “Mechanisms and Barriers in Nanomedicine” in May 2023 in Colorado, U.S.A., leading experts discussed the formulation, physiological, immunological, regulatory, clinical, and educational barriers. This position paper invites open, unrestricted, nonproprietary discussion among senior faculty, young …

Several decades after the invention of the flow Zn-Br2 systems persistent attempts have been made to develop stationary Zn-Br2 batteries. Such development should increase the energy density of the system simultaneously significantly reducing their cost and opening new challenges associated with the cell design and its performance. One of the major concerns is the rapid self-discharge of stationary systems leading to spontaneous charge loss during battery storage time. While self-discharge in flow cells is generally attributed to the chemical oxidation of the Zn anode, we show that the origin of self-discharge in a static configuration is completely different. By systematic investigations of activated carbon with different surface areas under varied charging conditions, mechanistic insights into this phenomenon were provided. Based on this understanding, we proposed herein an effective way to suppress the cathode …

The Kirkwood-Dirac quasiprobability distribution emerges from the quantum correlation function of two observables measured at distinct times and is therefore relevant for fundamental physics and quantum technologies. These quasiprobabilities follow all but one of Kolmogorov axioms for joint probability distributions: they can take non-positive values. Their experimental reconstruction becomes challenging when expectation values of incompatible observables are involved. Previous strategies aimed to reconstruct them using weak measurements or combining strong measurements. Here, we use a more direct approach, an interferometric scheme aided by an auxiliary system, to reconstruct the Kirkwood-Dirac quasiprobability distribution. We experimentally demonstrate the interferometric scheme in an electron-nuclear spin system associated with a nitrogen-vacancy center in diamond. By measuring the characteristic function, we reconstruct the quasiprobability distribution of the work and analyze the behavior of the first and second moments of work. Our results clarify the physical meaning of the work quasiprobability distribution in the context of quantum thermodynamics. Finally, having measured the real and imaginary parts of the Kirkwood-Dirac quasiprobability of work, we are also able to study the uncertainty of measuring the Hamiltonian of the system at two times, via the Robertson-Schr{\"o}dinger uncertainty relation, for different initial states.

Transition metal phosphides (TMPs) are promising anode materials for sodium ion battery, thanks to their high theoretical specific capacities. Nevertheless, they suffer from large volume change and from poor conductivity during prolonged cycling. Here we systematically investigate the role of different kinds of single/multi‐wall carbon nanotubes (SWCNTs/MWCNTs) as additives in order to stabilize copper phosphide particles (CuP2) as anode materials in sodium ion batteries (SIBs). All composites show enhancement in the overall capacity and cycling stability compared to the pristine CuP2 due to the well‐connected CNTs on and between the CuP2 particles. At a high currency density of 1 A g−1, CuP2@SWCNTs composite with 13 wt.% SWCNTs can deliver a specific capacity over 400 mAh g−1 for more than 60 cycles, much better than conventional hard carbon materials. The CNTs enhance the …

Carbonaceous materials are the most common catalyst supports in proton exchange membrane fuel cell (PEMFCs), yet their corrosion is one of the limiting factors in achieving high durability. Herein, we doped carbon supports with boron (B) to increase the corrosion-resistance of the support. Two types of B-doped carbons were synthesized and studied as platinum support materials. They varied in their morphologies, surface areas, and the types of boron species. The durability of Pt/B-doped carbon catalysts was investigated using the US-DOE catalysts’ supports accelerated stress test (AST) and a mass-spectrometer connected to the fuel cell effluent stream to quantify the mass of corroded carbon support in operando. The addition of boron to the carbon increased the stability of Pt catalysts in long-term usage of PEMFC. After 4,000 AST cycles, more than 50% of initial current density was preserved for the boron …

Carbonaceous materials are the most common catalyst supports in proton exchange membrane fuel cell (PEMFCs), yet their corrosion is one of the limiting factors in achieving high durability. Herein, we doped carbon supports with boron (B) to increase the corrosion-resistance of the support. Two types of B-doped carbons were synthesized and studied as platinum support materials. They varied in their morphologies, surface areas, and the types of boron species. The durability of Pt/B-doped carbon catalysts was investigated using the US-DOE catalysts’ supports accelerated stress test (AST) and a mass-spectrometer connected to the fuel cell effluent stream to quantify the mass of corroded carbon support in operando. The addition of boron to the carbon increased the stability of Pt catalysts in long-term usage of PEMFC. After 4,000 AST cycles, more than 50% of initial current density was preserved for the boron …

Chiral induction of chiral crystals attracts significant attention due to its implications for developing chiral materials and understanding mechanisms of symmetry breaking enantioselective crystallization of naturally chiral inorganic crystals and their potential use in chiral discrimination, which are, however, largely unexplored. Here, we investigate the chiral induction during the crystallization of naturally chiral Ag2CO3 crystals using arginine amino acid as the chiral inducer. The chiral nature of Ag2CO3 was evaluated using various techniques. Chiral crystals exhibited chiral selective binding toward different amino acid enantiomers. The significant selectivity in adsorption was confirmed by circular dichroism, high-performance liquid chromatography, and isothermal titration calorimetry. Understanding chiral induction in crystal growth may open avenues for the controlled assembly of chiral materials and the development …

Magnetic sensors based on the planar Hall effect (PHE) are attractive for applications where sub nano-Tesla field resolution is required. Here we present detailed noise study of PHE sensors made of two crossing masnetic ellipses that measure two axes of the magnetic field in the sensor plane with equivalent magnetic noise level better than 350 at 10 Hz in exactly the same region while keeping the size and noise level of a single axis sensor.

Layered transition metal dichalcogenides (TMDCs) are considered among the next-generation materials for gas sensing. Here, we report exfoliated 2 H-WS 2 nanosheets for the fabrication of highly performing NO 2 sensors. Thermal annealing at several temperatures was performed to investigate the oxidation of WS 2. The long-term stability of 2 H-WS 2 bulk was verified. Using droplet variation method, three batches of conductometric sensors from 2 H-WS 2 dispersions were fabricated on electrical transducers, namely two layers (2 L), five layers (5 L) and ten layers (10 L) WS 2 nanosheets. These sensors were tested towards low NO 2 concentrations at different temperatures (Room Temperature (20℃), 50℃ and 100℃) and relative humidity (RH) levels (20%, 40%, 60%, 80% and 90% RH). 2 L-WS 2 based sensor showed the highest response at room temperature (RT). Excellent repeatability (4 cycles) towards 1 …

Magnetic field-induced changes in the electrical resistance of materials reveal insights into the fundamental properties governing their electronic and magnetic behavior. Various classes of magnetoresistance have been realized, including giant, colossal, and extraordinary magnetoresistance, each with distinct physical origins. In recent years, extreme magnetoresistance (XMR) has been observed in topological and non-topological materials displaying a non-saturating magnetoresistance reaching 103−108% in magnetic fields up to 60 T. XMR is often intimately linked to a gapless band structure with steep bands and charge compensation. Here, we show that a linear XMR of 80,000% at 15 T and 2 K emerges at the high-mobility interface between the large band-gap oxides γ-Al2O3 and SrTiO3. Despite the chemically and electronically very dissimilar environment, the temperature/field phase diagrams of γ-Al2O …