BINA

Materials that transition between metal and insulator, the two opposing states that distinguish all solids, are fascinating because they underlie many mysteries in the physics of the solid state. In 1T-TaS, the metal-insulator transition is linked to a series of metastable states of a chiral charge density wave whose basic nature is still an open question. In this work, we show that pulses of current through these materials create current-carrying boundary channels that distinguish the metallic and insulating states. We demonstrate electrical control of these channels' properties, suggesting their formation could be due to the complex interplay of the formation of domain walls and the viscous flow of electrons. Our findings show that physical boundaries play a key role in the properties of the metastable states of the metal-insulator transition, highlighting new possibilities for in-situ electrical design and active manipulation of electrical components.

Nickel-rich layered oxide cathode materials with low cobalt content, such as LiNi 0.90 Mn 0.05 Co 0.05 O 2 (NMC90), have the potential to enable cost-effective, high-energy-density lithium-metal batteries. However, NMC90 cathode materials are prone to severe parasitic reactions at higher voltages during prolonged cycling. The addition of small percentages of electrolyte additives to the neat commercial electrolyte can significantly enhance the overall electrochemical performance of lithium-metal batteries. This study investigates the effects of zinc triflate (Zn (Otf) 2) as an electrolyte additive on the enhancement of the electrochemical performances of lithium-metal batteries comprising nickel-rich layered oxide cathode materials. X-ray photoelectron spectroscopy analysis revealed that Zn (Otf) 2 decomposition leads to enhanced fluorination at the interfacial layers, which contributes to improved chemical stability …

Magnetic sensors based on the planar Hall effect (PHE) are attractive for applications where sub nano-Tesla field resolution is required. Here we present detailed noise study of PHE sensors made of two crossing masnetic ellipses that measure two axes of the magnetic field in the sensor plane with equivalent magnetic noise level better than 350 at 10 Hz in exactly the same region while keeping the size and noise level of a single axis sensor.

Self‐assembly of biological elements into biomimetic cargo carriers for targeting and delivery is a promising approach. However, it still holds practical challenges. We developed a functionalization approach of DNA origami (DO) nanostructures with neuronal growth factor (NGF) for manipulating neuronal systems. NGF bioactivity and its interactions with the neuronal system were demonstrated in vitro and in vivo models. The DO elements fabricated by molecular self‐assembly have manipulated the surrounding environment through static spatially and temporally controlled presentation of ligands to the cell surface receptors. Our data showed effective bioactivity in differentiating PC12 cells in vitro. Furthermore, the DNA origami NGF (DON) affected the growth directionality and spatial capabilities of dorsal root ganglion neurons in culture by introducing a chemotaxis effect along a gradient of functionalized DO …

Terpene Synthases (TPS) catalyze the formation of multicyclic, complex terpenes and terpenoids from linear substrates. Molecular docking is an important research tool that can further our understanding of TPS multistep mechanisms and guide enzyme design. Standard docking programs are not well suited to tackle the unique challenges of TPS, like the many chemical steps which form multiple stereo-centers, the weak dispersion interactions between the isoprenoid chain and the hydrophobic region of the active site, description of carbocation intermediates, and finding mechanistically meaningful sets of docked poses. To address these and other unique challenges, we developed the multistate, multiscale docking program EnzyDock and used it to study many TPS and other enzymes. In this review we discuss the unique challenges of TPS, the special features of EnzyDock developed to address these challenges and demonstrate its successful use in ongoing research on the bacterial TPS CotB2.

Abstract Hypothesis Room Temperature Ionic Liquids (RTILs) bulk's molecular layering dominates their structure also at the RTIL/sapphire interface, increasing the layer spacing with the cationic alkyl chain length n. However, the negatively-charged sapphire surface compresses the layers, increases the layering range, and affects the intra-layer structure in yet unknown ways. Experiments X-ray reflectivity (XR) off the RTIL/sapphire interface, for a broad homologous RTIL series 1-alkyl-3-methylimidazolium bis (trifluoromethansulfonyl) imide, hitherto unavailable for any RTIL. Findings RTIL layers against the sapphire, exhibit two spacings: d a and d b. d a is n-varying, follows the behavior of the bulk spacing but exhibits a downshift, thus showing significant layer compression, and over twofold polar slab thinning. The latter suggests exclusion of anions from the interfacial region due to the negative sapphire charging …

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X-ray imaging is a prevalent technique for non-invasively visualizing the interior of the human body and opaque instruments. In most commercial x-ray modalities, an image is formed by measuring the x-rays that pass through the object of interest. However, despite the potential of scattered radiation to provide additional information about the object, it is often disregarded due to its inherent tendency to cause blurring. Consequently, conventional imaging modalities do not measure or utilize these valuable data. In contrast, we propose and experimentally demonstrate a high-resolution technique for x-ray computed tomography (CT) that measures scattered radiation by exploiting computational ghost imaging (CGI). We show that our method can provide sub-200 {\mu}m resolution, exceeding the capabilities of most existing x-ray imaging modalities. Our research reveals a promising technique for incorporating scattered radiation data in CT scans to improve image resolution and minimize radiation exposure for patients. The findings of our study suggest that our technique could represent a significant advancement in the fields of medical and industrial imaging, with the potential to enhance the accuracy and safety of diagnostic imaging procedures.

Enhancing the reproducibility and comprehension of adaptive immune receptor repertoire sequencing (AIRR-seq) data analysis is critical for scientific progress. This study presents guidelines for reproducible AIRR-seq data analysis, and a collection of ready-to-use pipelines with comprehensive documentation. To this end, ten common pipelines were implemented using ViaFoundry, a user-friendly interface for pipeline management and automation. This is accompanied by versioned containers, documentation and archiving capabilities. The automation of pre-processing analysis steps and the ability to modify pipeline parameters according to specific research needs are emphasized. AIRR-seq data analysis is highly sensitive to varying parameters and setups; using the guidelines presented here, the ability to reproduce previously published results is demonstrated. This work promotes transparency …

We demonstrate the pioneering use of a quantum interferometer with x-rays, highlighting its effectiveness in precisely measuring the phase accumulated in opaque media. Our work uncovers novel opportunities for measuring sub-Angstrom optical-path differences.

Chiral induction of chiral crystals attracts significant attention due to its implications for developing chiral materials and understanding mechanisms of symmetry breaking enantioselective crystallization of naturally chiral inorganic crystals and their potential use in chiral discrimination, which are, however, largely unexplored. Here, we investigate the chiral induction during the crystallization of naturally chiral Ag2CO3 crystals using arginine amino acid as the chiral inducer. The chiral nature of Ag2CO3 was evaluated using various techniques. Chiral crystals exhibited chiral selective binding toward different amino acid enantiomers. The significant selectivity in adsorption was confirmed by circular dichroism, high-performance liquid chromatography, and isothermal titration calorimetry. Understanding chiral induction in crystal growth may open avenues for the controlled assembly of chiral materials and the development …

In recent years, steady progress has been made in synthesizing and characterizing engineered nanoparticles, resulting in several approved drugs and multiple promising candidates in clinical trials. Regulatory agencies such as the Food and Drug Administration and the European Medicines Agency released important guidance documents facilitating nanoparticle-based drug product development, particularly in the context of liposomes and lipid-based carriers. Even with the progress achieved, it is clear that many barriers must still be overcome to accelerate translation into the clinic. At the recent conference workshop “Mechanisms and Barriers in Nanomedicine” in May 2023 in Colorado, U.S.A., leading experts discussed the formulation, physiological, immunological, regulatory, clinical, and educational barriers. This position paper invites open, unrestricted, nonproprietary discussion among senior faculty, young …

Super-enhancers are unique gene expression regulators widely involved in cancer development. Spread over large DNA segments, they tend to be found next to oncogenes. The super-enhancer c-MYC locus forms long-range chromatin looping with nearby genes, which brings the enhancer and the genes into proximity, to promote gene activation. The colon cancer-associated transcript 1 (CCAT1) gene, which is part of the MYC locus, transcribes a lncRNA that is overexpressed in colon cancer cells through activation by MYC. Comparing different types of cancer cell lines using RNA fluorescence in situ hybridization (RNA FISH), we detected very prominent CCAT1 expression in HeLa cells, observed as several large CCAT1 nuclear foci. We found that dozens of CCAT1 transcripts accumulate on the gene locus, in addition to active transcription occurring from the gene. The accumulating transcripts are released …

Insertion of hydrophobic nanoparticles into phospholipid bilayers is limited to small particles that can incorporate into a hydrophobic membrane core between two lipid leaflets. Incorporation of nanoparticles above this size limit requires the development of challenging surface engineering methodologies. In principle, increasing the long-chain lipid component in the lipid mixture should facilitate incorporation of larger nanoparticles. Here, we explore the effect of incorporating very long phospholipids (C24:1) into small unilamellar vesicles on the membrane insertion efficiency of hydrophobic nanoparticles that are 5–11 nm in diameter. To this end, we improve an existing vesicle preparation protocol and utilized cryogenic electron microscopy imaging to examine the mode of interaction and evaluate the insertion efficiency of membrane-inserted nanoparticles. We also perform classical coarse-grained molecular …

Magnetic field-induced changes in the electrical resistance of materials reveal insights into the fundamental properties governing their electronic and magnetic behavior. Various classes of magnetoresistance have been realized, including giant, colossal, and extraordinary magnetoresistance, each with distinct physical origins. In recent years, extreme magnetoresistance (XMR) has been observed in topological and non-topological materials displaying a non-saturating magnetoresistance reaching 103−108% in magnetic fields up to 60 T. XMR is often intimately linked to a gapless band structure with steep bands and charge compensation. Here, we show that a linear XMR of 80,000% at 15 T and 2 K emerges at the high-mobility interface between the large band-gap oxides γ-Al2O3 and SrTiO3. Despite the chemically and electronically very dissimilar environment, the temperature/field phase diagrams of γ-Al2O …

Leishmania is the causative agent of cutaneous and visceral diseases affecting millions of individuals worldwide. Pseudouridine (Ψ), the most abundant modification on rRNA, changes during the parasite life cycle. Alterations in the level of a specific Ψ in helix 69 (H69) affected ribosome function. To decipher the molecular mechanism of this phenotype, we determine the structure of ribosomes lacking the single Ψ and its parental strain at ∼2.4–3 Å resolution using cryo-EM. Our findings demonstrate the significance of a single Ψ on H69 to its structure and the importance for its interactions with helix 44 and specific tRNAs. Our study suggests that rRNA modification affects translation of mRNAs carrying codon bias due to selective accommodation of tRNAs by the ribosome. Based on the high-resolution structures, we propose a mechanism explaining how the ribosome selects specific tRNAs.

The Adaptive Immune Receptor Repertoire Knowledge Commons (AKC) is a publicly accessible repository of data and knowledge about 1) adaptive immune receptors (AIRs) and AIR repertoires, 2) the complex genomic loci encoding AIR genes, and 3) the antigens and epitopes bound by AIR. It empowers research questions that require the integration of data across these three domains to evaluate their interplay and relative contributions across a broad range of health and disease states. The AKC is being established by merging data from existing, community-backed repositories and applying existing and novel, cross-cutting knowledge-generation algorithms to the integrated data. The AKC currently includes 1) data from the AIRR Data Commons, which contains~ 10,000 repertoires with billions of AIRs, integrated with 2) AIR germline allele, genotype, haplotype, and population genetic data from the OGRDB and …

Solid-state lithium metal batteries (SSLBs) using inorganic solid-state electrolytes (SSEs) have attracted extensive scientific and commercial interest owing to their potential to provide higher energy density and safety than conventional Li-ion batteries. These batteries are subject to external pressure during both their manufacturing processes (fabrication pressure) and their operation (stack pressure). This pressure not only affects the intrinsic properties of both the electrolytes (such as ionic conductivity and electrochemical voltage window) and the electrodes (such as ion transport and structural variation) but also determines the cyclability and safety of the whole battery. Hence, understanding the effect of pressure is essential when designing high-performance SSLBs. This Review aims to elucidate the coupling between external pressure and electrochemistry in these batteries. We summarize the effects of external …

Thermoelastic stimulation of surface acoustic waves in standard silicon photonic circuits is enhanced through the absorption of pump light in surface plasmon resonant unit cells. Transmission losses are reduced by 20 dB.