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Jan 2024 • Results in Physics

Generic arrays of surface-positioned and shallow-buried gold multi-shapes as reference samples to benchmark near-field microscopes. Part 1: Applications in s-SNOM depth imaging

Binyamin Kusnetz, Jeremy Belhassen, Denis E Tranca, Stefan G Stanciu, Stefan-Razvan Anton, Zeev Zalevsky, George A Stanciu, Avi Karsenty

A wide palette of nanoscale imaging techniques operating in the near-field regime has been reported to date, enabling an important number of scientific breakthroughs. While the tuning and benchmarking of near-field microscopes represent a very important step for optimizing the outputs of the imaging sessions, no generally acknowledged standards exist yet in terms of calibration of near-field microscopes, which would play an important role in fully exploiting the potential of these instruments. With this work, we aim to contribute to filling in this gap, by introducing a prototypical sample, that holds potential for becoming a benchmark with respect to comparing the performances of diverse near-field measurement techniques, including traditional, aperture based, scanning near field microscopy (SNOM), or apertureless variants, such as scattering-type scanning nearfield optical microscopy (s-SNOM). The proposed …

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Jan 2024 • ACS Applied Bio Materials

Protecting the Antibacterial Coating of Urinal Catheters for Improving Safety

Ilana Perelshtein, Sivan Shoshani, Gila Jacobi, Michal Natan, Nataliia Dudchenko, Nina Perkas, Maria Tkachev, Rossella Bengalli, Luisa Fiandra, Paride Mantecca, Kristina Ivanova, Tzanko Tzanov, Ehud Banin, Aharon Gedanken

Catheter-associated urinary tract infections (CAUTI) are among the most common bacterial infections associated with prolonged hospitalization and increased healthcare expenditures. Despite recent advances in the prevention and treatment of these infections, there are still many challenges remaining, among them the creation of a durable catheter coating, which prevents bacterial biofilm formation. The current work reports on a method of protecting medical tubing endowed with antibiofilm properties. Silicone catheters coated sonochemically with ZnO nanoparticles (NPs) demonstrated excellent antibiofilm effects. Toward approval by the European Medicines Agency, it was realized that the ZnO coating would not withstand the regulatory requirements of avoiding dissolution for 14 days in artificial urine examination. Namely, after exposure to urine for 14 days, the coating amount was reduced by 90%. Additional …

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Jan 2024 • Journal of Colloid and Interface Science

Ordering of ionic liquids at a charged sapphire interface: Evolution with cationic chain length

Diego Pontoni, Marco DiMichiel, Bridget M Murphy, Veijo Honkimäki, Moshe Deutsch

Abstract Hypothesis Room Temperature Ionic Liquids (RTILs) bulk's molecular layering dominates their structure also at the RTIL/sapphire interface, increasing the layer spacing with the cationic alkyl chain length n. However, the negatively-charged sapphire surface compresses the layers, increases the layering range, and affects the intra-layer structure in yet unknown ways. Experiments X-ray reflectivity (XR) off the RTIL/sapphire interface, for a broad homologous RTIL series 1-alkyl-3-methylimidazolium bis (trifluoromethansulfonyl) imide, hitherto unavailable for any RTIL. Findings RTIL layers against the sapphire, exhibit two spacings: d a and d b. d a is n-varying, follows the behavior of the bulk spacing but exhibits a downshift, thus showing significant layer compression, and over twofold polar slab thinning. The latter suggests exclusion of anions from the interfacial region due to the negative sapphire charging …

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Jan 2024 • Journal of Vacuum Science & Technology B

Doping engineering: Next step toward room temperature performance of terahertz quantum cascade lasers

Nathalie Lander Gower, Shiran Levy, Silvia Piperno, Sadhvikas J Addamane, John L Reno, Asaf Albo

We hereby offer a comprehensive analysis of various factors that could potentially enable terahertz quantum cascade lasers (THz QCLs) to achieve room temperature performance. We thoroughly examine and integrate the latest findings from recent studies in the field. Our work goes beyond a mere analysis; it represents a nuanced and comprehensive exploration of the intricate factors influencing the performance of THz QCLs. Through a comprehensive and holistic approach, we propose novel insights that significantly contribute to advancing strategies for improving the temperature performance of THz QCLs. This all-encompassing perspective allows us not only to present a synthesis of existing knowledge but also to offer a fresh and nuanced strategy to improve the temperature performance of THz QCLs. We draw new conclusions from prior works, demonstrating that the key to enhancing THz QCL temperature …

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Jan 2024 • Physical Review A

Light that appears to come from a source that does not exist

Itamar Stern, Yakov Bloch, Einav Grynszpan, Merav Kahn, Yakir Aharonov, Justin Dressel, Eliahu Cohen, John C Howell

Superoscillatory, band-limited functions oscillate faster than their fastest Fourier component. Superoscillations have been intensively explored recently as they give rise to many out-of-the-spectrum phenomena entailing both fundamental and applied significance. We experimentally demonstrate a form of superoscillations which is manifested by light apparently coming from a source located far away from the actual one. These superoscillations are sensed through sharp transverse shifts in the local wave vector at the minima of a pinhole diffraction pattern. We call this phenomenon “optical ventriloquism.”

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Jan 2024 • Small

Mitigating Interfacial Capacity Fading in Vanadium Pentoxide by Sacrificial Vanadium Sulfide Encapsulation for Rechargeable Mg‐Ion Batteries

Ayan Mukherjee, Sankalpita Chakrabarty, Sarah Taragin, Eliran Evinstein, Piyali Bhanja, Akanksha Joshi, Hagit Aviv, Ilana Perelshtein, Mamata Mohapatra, Suddhasatwa Basu, Malachi Noked

Rechargeable Mg‐ion Batteries (RMB) containing a Mg metal anode offer the promise of higher specific volumetric capacity, energy density, safety, and economic viability than lithium‐ion battery technology, but their realization is challenging. The limited availability of suitable inorganic cathodes compatible with electrolytes relevant to Mg metal anode restricts the development of RMBs. Despite the promising capability of some oxides to reversibly intercalate Mg+2 ions at high potential, its lack of stability in chloride‐containing ethereal electrolytes, relevant to Mg metal anode hinders the realization of a full practical RMB. Here the successful in situ encapsulation of monodispersed spherical V2O5 (≈200 nm) is demonstrated by a thin layer of VS2 (≈12 nm) through a facile surface reduction route. The VS2 layer protects the surface of V2O5 particles in RMB electrolyte solution (MgCl2 + MgTFSI in DME). Both V2O5 …

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Jan 2024 • ACS Applied Bio Materials

Protecting the Antibacterial Coating of Urinal Catheters for Improving Safety

Ilana Perelshtein, Sivan Shoshani, Gila Jacobi, Michal Natan, Nataliia Dudchenko, Nina Perkas, Maria Tkachev, Rossella Bengalli, Luisa Fiandra, Paride Mantecca, Kristina Ivanova, Tzanko Tzanov, Ehud Banin, Aharon Gedanken

Catheter-associated urinary tract infections (CAUTI) are among the most common bacterial infections associated with prolonged hospitalization and increased healthcare expenditures. Despite recent advances in the prevention and treatment of these infections, there are still many challenges remaining, among them the creation of a durable catheter coating, which prevents bacterial biofilm formation. The current work reports on a method of protecting medical tubing endowed with antibiofilm properties. Silicone catheters coated sonochemically with ZnO nanoparticles (NPs) demonstrated excellent antibiofilm effects. Toward approval by the European Medicines Agency, it was realized that the ZnO coating would not withstand the regulatory requirements of avoiding dissolution for 14 days in artificial urine examination. Namely, after exposure to urine for 14 days, the coating amount was reduced by 90%. Additional …

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Jan 2024 • Physical Review Materials

Piezoelectric electrostatic superlattices in monolayer

Ashwin Ramasubramaniam, Doron Naveh

Modulation of electronic properties of materials by electric fields is central to the operation of modern semiconductor devices, providing access to complex electronic behaviors and greater freedom in tuning the energy bands of materials. Here, we explore one-dimensional superlattices induced by a confining electrostatic potential in monolayer , a prototypical two-dimensional semiconductor. Using first-principles calculations, we show that periodic potentials applied to monolayer induce electrostatic superlattices in which the response is dominated by structural distortions relative to purely electronic effects. These structural distortions reduce the intrinsic band gap of the monolayer substantially while also polarizing the monolayer through piezoelectric coupling, resulting in spatial separation of charge carriers as well as Stark shifts that produce dispersive minibands. Importantly, these minibands inherit the valley …

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Jan 2024 • arXiv preprint arXiv:2401.07325

Randomly Pruning the Sachdev‐Ye‐Kitaev Model

Richard Berkovits

The Sachdev-Ye-Kitaev model (SYK) is renowned for its short-time chaotic behavior, which plays a fundamental role in its application to various fields such as quantum gravity and holography. The Thouless energy, representing the energy scale at which the universal chaotic behavior in the energy spectrum ceases, can be determined from the spectrum itself. When simulating the SYK model on classical or quantum computers, it is advantageous to minimize the number of terms in the Hamiltonian by randomly pruning the couplings. In this paper, we demonstrate that even with a significant pruning, eliminating a large number of couplings, the chaotic behavior persists up to short time scales This is true even when only a fraction of the original couplings in the fully connected SYK model, specifically , is retained. Here, represents the number of sites, and . The properties of the long-range energy scales, corresponding to short time scales, are verified through numerical singular value decomposition (SVD) and level number variance calculations.

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Jan 2024 • Nanophotonics

Extraction of the electron excess temperature in terahertz quantum cascade lasers from laser characteristics

Nathalie Lander Gower, Shiran Levy, Silvia Piperno, Sadhvikas J Addamane, John L Reno, Asaf Albo

We propose a method to extract the upper laser level’s (ULL’s) excess electronic temperature from the analysis of the maximum light output power (P max) and current dynamic range ΔJ d = (J max − J th) of terahertz quantum cascade lasers (THz QCLs). We validated this method, both through simulation and experiment, by applying it on THz QCLs supporting a clean three-level system. Detailed knowledge of electronic excess temperatures is of utmost importance in order to achieve high temperature performance of THz QCLs. Our method is simple and can be easily implemented, meaning an extraction of the excess electron temperature can be achieved without intensive experimental effort. This knowledge should pave the way toward improvement of the temperature performance of THz QCLs beyond the state-of-the-art.

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Jan 2024 • Quantum Science and Technology

Quantum circuits for measuring weak values, Kirkwood–Dirac quasiprobability distributions, and state spectra

Rafael Wagner, Zohar Schwartzman-Nowik, Ismael L Paiva, Amit Te’eni, Antonio Ruiz-Molero, Rui Soares Barbosa, Eliahu Cohen, Ernesto F Galvão

Weak values and Kirkwood–Dirac (KD) quasiprobability distributions have been independently associated with both foundational issues in quantum theory and advantages in quantum metrology. We propose simple quantum circuits to measure weak values, KD distributions, and spectra of density matrices without the need for post-selection. This is achieved by measuring unitary-invariant, relational properties of quantum states, which are functions of Bargmann invariants, the concept that underpins our unified perspective. Our circuits also enable experimental implementation of various functions of KD distributions, such as out-of-time-ordered correlators and the quantum Fisher information in post-selected parameter estimation, among others. An upshot is a unified view of nonclassicality in all those tasks. In particular, we discuss how negativity and imaginarity of Bargmann invariants relate to set coherence.

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Jan 2024 • Surfaces and Interfaces

Heteroatom co-doping (N, NS, NB) on carbon dots and their antibacterial and antioxidant properties

Arumugam Saravanan, Poushali Das, Moorthy Maruthapandi, Saurav Aryal, Shulamit Michaeli, Yitzhak Mastai, John HT Luong, Aharon Gedanken

The development of new nanoparticle-based antibiotics with biocompatible properties is an emerging advance in nanotechnology. This study advocated the development of carbon dots (CDs) doped with nitrogen, nitrogen with sulfur, and nitrogen with boron (N, NS, and NB-CDs). This led to changes in the properties of the CDs, both chemically and biologically. A facile hydrothermal technique was used to synthesize CDs and the formation of CDs was confirmed through various analytical techniques. The CDs had sizes ranging from 3.2 – 4.8 nm and ζ-potential values of +13 to 27 mV. The doped CDs exhibited moderate changes in fluorescence behaviors depending on the excitation wavelength (λex). The N- and NB-doped CDs were effective at eliminating gram-negative pathogens (E. coli and K. pneumoniae), with minimum inhibitory concentrations (MIC) of 300 µg/mL and 400 µg/mL, respectively. The …

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Jan 2024 • Physical Review A

Light that appears to come from a source that does not exist

Itamar Stern, Yakov Bloch, Einav Grynszpan, Merav Kahn, Yakir Aharonov, Justin Dressel, Eliahu Cohen, John C Howell

Superoscillatory, band-limited functions oscillate faster than their fastest Fourier component. Superoscillations have been intensively explored recently as they give rise to many out-of-the-spectrum phenomena entailing both fundamental and applied significance. We experimentally demonstrate a form of superoscillations which is manifested by light apparently coming from a source located far away from the actual one. These superoscillations are sensed through sharp transverse shifts in the local wave vector at the minima of a pinhole diffraction pattern. We call this phenomenon “optical ventriloquism.”

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Jan 2024 • Journal of the American Chemical Society

Introducing electron buffers into intermetallic Pt alloys against surface polarization for high-performing fuel cells

Xuan Liu, Yuhan Wang, Jiashun Liang, Shenzhou Li, Siyang Zhang, Dong Su, Zhao Cai, Yunhui Huang, Lior Elbaz, Qing Li

Surface polarization under harsh electrochemical environments usually puts catalysts in a thermodynamically unstable state, which strictly hampers the thermodynamic stability of Pt-based catalysts in high-performance fuel cells. Here, we report a strategy by introducing electron buffers (variable-valence metals, M = Ti, V, Cr, and Nb) into intermetallic Pt alloy nanoparticle catalysts to suppress the surface polarization of Pt shells using the structurally ordered L10-M-PtFe as a proof of concept. Operando X-ray absorption spectra analysis suggests that with the potential increase, electron buffers, especially Cr, could facilitate an electron flow to form a electron-enriched Pt shell and thus weaken the surface polarization and tensile Pt strain. The best-performing L10-Cr-PtFe/C catalyst delivers superb oxygen reduction reaction (ORR) activity (mass activity = 1.41/1.02 A mgPt–1 at 0.9 V, rated power density = 14.0/9.2 W mg …

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Jan 2024 • Journal of the American Chemical Society

Introducing Electron Buffers into Intermetallic Pt Alloys against Surface Polarization for High-Performing Fuel Cells

Xuan Liu, Yuhan Wang, Jiashun Liang, Shenzhou Li, Siyang Zhang, Dong Su, Zhao Cai, Yunhui Huang, Lior Elbaz, Qing Li

Surface polarization under harsh electrochemical environments usually puts catalysts in a thermodynamically unstable state, which strictly hampers the thermodynamic stability of Pt-based catalysts in high-performance fuel cells. Here, we report a strategy by introducing electron buffers (variable-valence metals, M = Ti, V, Cr, and Nb) into intermetallic Pt alloy nanoparticle catalysts to suppress the surface polarization of Pt shells using the structurally ordered L10-M-PtFe as a proof of concept. Operando X-ray absorption spectra analysis suggests that with the potential increase, electron buffers, especially Cr, could facilitate an electron flow to form a electron-enriched Pt shell and thus weaken the surface polarization and tensile Pt strain. The best-performing L10-Cr-PtFe/C catalyst delivers superb oxygen reduction reaction (ORR) activity (mass activity = 1.41/1.02 A mgPt–1 at 0.9 V, rated power density = 14.0/9.2 W mg …

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2024 • Energy Advances

Nitrogen-doped hierarchically porous carbons for non-alkaline Zn–air battery cathodes

Roman R Kapaev, Yair Shahaf, Masato Sonoo, Amit Ohayon, David Eisenberg, Malachi Noked

Non-alkaline Zn-air batteries (ZABs) attract great attention because they can potentially combine high energy density, safety, and low cost. However, cathodes for non-alkaline ZABs are underdeveloped and suffer from poor charge-discharge kinetics. Here we study N-doped hierarchically porous carbons, which are synthesized using a self-templating approach, as catalytic scaffolds for oxygen reduction and oxygen evolution reactions (ORR and OER) in near-neutral media. Interestingly, although nitrogen doping does not improve the OER performance or carbon corrosion rate during the OER, it leads to a significant boost of the ORR kinetics in non-alkaline ZABs. Specifically, the reported N-doped hierarchically porous carbons outperform their nitrogen-free hierarchically porous analog, as well as the best commercially available nitrogen-free carbons. These results show that N-doped carbons can serve as …

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2024 • Journal of Materials Chemistry C

From monolayer to thin films: engineered bandgap in CVD grown Bi 2 Se (3− x) S x topological insulator alloys

Michal Poplinger, Dimitrios Kaltsas, Chen Stern, Pilkhaz Nanikashvili, Adi Levi, Rajesh Kumar Yadav, Sukanta Nandi, Yuxiao Wu, Avinash Patsha, Ariel Ismach, Ashwin Ramasubramaniam, Amaia Pesquera, Amaia Zurutuza, Ioanna Zergiot, Leonidas Tsetseris, Tomer Lewi, Doron Naveh

Topological insulators, a class of materials possessing bulk bandgap and metallic surface states with a topological nontrivial symmetry, are considered promising candidates for emerging quantum and optoelectronic applications. However, achieving scalable growth and control over parameters including thickness, carrier density, bulk bandgap, and defect density remains a challenge in realizing such applications. In this work, we show the scalable growth of topological insulator alloys Bi2Se(3-x)Sx and demonstrate composition-tunable bandgap, using chemical vapor deposition (CVD). A bandgap increase of up to ~40% at a sulfur concentration of ~15% is demonstrated. Correspondingly, the real part (n) of the refractive index is reduced in the alloy by ~25% relative to that of Bi2Se3. Additionally, electronic transport measurements indicate a bulk p-type doping and field-effect tunable metallic surface states of the …

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2024 • bioRxiv

Towards optical measurements of membrane potential values in Bacillus subtilis using fluorescence lifetime

Debjit Roy, Xavier Michalet, Evan Miller, Shimon Weiss

Membrane potential (MP) changes can provide a simple readout of bacterial functional and metabolic state or stress levels. While several optical methods exist for measuring fast changes in MP in excitable cells, there is a dearth of such methods for absolute and precise measurements of steady-state membrane potentials (MPs) in bacterial cells. Conventional electrode-based methods for the measurement of MP are not suitable for calibrating optical methods in small bacterial cells. While optical measurement based on Nernstian indicators have been successfully used, they do not provide absolute or precise quantification of MP or its changes. We present a novel, calibrated MP recording approach to address this gap. Our method is based on (i) a unique VoltageFluor (VF) optical transducer, whose fluorescence lifetime varies as a function of MP via photoinduced electron transfer (PeT) and (ii) a quantitative phasor-FLIM analysis for high-throughput readout. This method allows MP changes to be easily recorded, quantified and visualized. Using our preliminary Bacillus subtilis-specific MP versus VF lifetime calibration, we estimated the MP for unperturbed B. subtilis cells to be -65 mV and that for chemically depolarized cells as -14 mV. Our work paves the way for deeper insights into bacterial electrophysiology and bioelectricity research.

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2024 • Chemistry‐Methods 4 (3), e202300039, 2024

Exploring the Capability of Framework Materials to Improve Cathodes’ Performance for High‐energy Lithium‐ion Batteries

Rajashree Konar, Sandipan Maiti, Boris Markovsky, Hadar Sclar, Doron Aurbach

Lithiated transition metal oxides are the most important cathode materials for lithium‐ion batteries. Many efforts have been devoted in recent years to improving their energy density, stability, and safety, as demonstrated by thousands of publications. However, the commercialization of several promising materials is limited due to obstacles like stability limitations. To overcome the limitations of energetically high‐voltage or high‐capacity cathode materials, unconventional solutions for their surface engineering were suggested; among them, metal–organic frameworks (MOFs) and zeolites have been employed. MOFs possess favorable characteristics for stabilization goals, including manageable structures, topological control, high porosity, large surface area, and low density. This review article explores promising strategies for improving the electrochemical behavior of favorable cathode materials through surface …

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2024 • bioRxiv

nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Yann Lee, Cole Jensen, David Ladd, Friederike Hanssen, Simon Heumos, nf-core community, Gur Yaari, Markus C Kowarik, Sven Nahnsen, Steven H Kleinstein

Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) is a valuable experimental tool to study the immune state in health and following immune challenges such as infectious diseases, (auto)immune diseases, and cancer. Several tools have been developed to reconstruct B cell and T cell receptor sequences from AIRR-seq data and infer B and T cell clonal relationships. However, currently available tools offer limited parallelization across samples, scalability or portability to high-performance computing infrastructures. To address this need, we developed nf-core/airrflow, an end-to-end bulk and single-cell AIRR-seq processing workflow which integrates the Immcantation Framework following BCR and TCR sequencing data analysis best practices. The Immcantation Framework is a comprehensive toolset, which allows the processing of bulk and single-cell AIRR-seq data from raw read processing to clonal inference. nf-core/airrflow is written in Nextflow and is part of the nf-core project, which collects community contributed and curated Nextflow workflows for a wide variety of analysis tasks. We assessed the performance of nf-core/airrflow on simulated sequencing data and show example results with real datasets. To demonstrate the applicability of nf-core/airrflow to the high-throughput processing of large AIRR-seq datasets, we validated and extended previously reported findings of convergent antibody responses to SARS-CoV-2 by analyzing 97 COVID-19 infected individuals and 99 healthy controls retrieved from public databases. nf-core/airrflow is available free of charge, under the MIT license on GitHub (https://github.com/nf-core …

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2024 • bioRxiv

An unbiased comparison of immunoglobulin sequence aligners

Thomas Konstantinovsky, Ayelet Peres, Pazit Polak, Gur Yaari

Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) is critical for our understanding of the adaptive immune system's dynamics in health and disease. Reliable analysis of AIRR-seq data depends on accurate Immunoglobulin (Ig) sequence alignment. Various Ig sequence aligners exist, but there is no unified benchmarking standard representing the complexities of AIRR-seq data, obscuring objective comparisons of aligners across tasks. Here, we introduce GenAIRR, an efficient simulation framework for generating Ig sequences alongside their ground truths. GenAIRR realistically simulates the intricacies of V(D)J recombination, somatic hypermutation, and an array of sequence corruptions. We comprehensively assessed prominent Ig sequence aligners across various metrics, unveiling unique performance characteristics for each aligner. The GenAIRR-produced datasets, combined with the proposed rigorous evaluation criteria, establish a solid basis for unbiased benchmarking of immunogenetics computational tools. It sets up the ground for further improving the crucial task of Ig sequence alignment, ultimately enhancing our understanding of adaptive immunity.

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