BINA

Raman spectroscopy is an extremely powerful laser-based method for characterizing materials based on their unique inelastic scattering spectrum. Ultimately, the power of the technique is limited by the resolution of the spectrometer. Here we introduce a new method for achieving Super-Spectral-Resolution Raman Spectroscopy (SSR-RS), by angle-tuning a Fabry–Pérot (F-P) etalon filter that we incorporated in a micro-Raman setup. A monolithically coated F-P etalon structure, only 1.686 mm in thickness, was mounted onto an angle-tunable motorized stage, and Raman spectra were automatically acquired for many different angles of the etalon. Using a low-resolution grating of 150 g/mm by itself, without the F-P etalon, we obtained a best-case regular Raman spectral linewidth of 44 cm−1 for the characteristic Raman peak from a diamond sample. When we applied the SSR-RS technique to diamond, we obtained …

Acoustic-directed assembly is a modular and flexible bottom-up technique with the potential to pattern a wide range of materials. Standing acoustic waves have been previously employed for patterning preformed metal particles, however, direct patterning of metallic structures from precursors remains unexplored. Here, we investigate utilization of standing waves to exert control over chemical reaction products, while also exploring their potential in the formation of multi-layered and composite micro-structures. Periodic metallic micro-structures were formed in a single step, simplifying microstructure fabrication. Concentric structures were obtained by introducing a metal precursor salt and a reducing agent into a cylindrical piezoelectric resonator that also served as a reservoir. In addition, we introduce an innovative approach to directly fabricate metallic multi-layer and composite structures by reducing different metal ions or adding nanoparticles during the reduction step. Fewer steps are needed, compared with other methods, and there is no need to stabilize the nanoparticles or to ensure chemical affinity between the metallic matrix and inorganic nanoparticles. This innovative approach is promising for production of complex microstructures with enhanced functionality and controlled properties.

In this comprehensive review, we delve into super-resolution optical imaging techniques and their diverse applications. Our primary focus is on linear optics super-resolution methods, encompassing a wide array of concepts ranging from time multiplexing, ptychography, and deep learning-based microscopy to compressive sensing and random phase encoding techniques. Additionally, we explore compressed sensing, non-spatial resolution improvement, and sparsity-based geometric super-resolution. Furthermore, we investigate various methods based on field of view, wavelength, coherence, polarization, gray level, and code division multiplexing, as well as localization microscopy. Our review extends to stimulated emission depletion microscopy via pump-probe super-resolution techniques, providing a detailed analysis of their working applications. We then shift our attention to near-field scanning optical …

BackgroundAngelman syndrome (AS) is a rare neurodevelopmental genetic disorder caused by the loss of function of the ubiquitin ligase E3A (UBE3A) gene, affecting approximately 1: 15,000 live births. We have recently shown that mitochondrial function in AS is altered during mid to late embryonic brain development leading to increased oxidative stress and enhanced apoptosis of neural precursor cells. However, the overall alterations of metabolic processes are still unknown. Hence, as a follow-up, we aim to investigate the metabolic profiles of wild-type (WT) and AS littermates and to identify which metabolic processes are aberrant in the brain of AS model mice during embryonic development.MethodsWe collected brain tissue samples from mice embryos at E16. 5 and performed metabolomic analyses using proton nuclear magnetic resonance (1 H-NMR) spectroscopy. Multivariate and Univariate analyses …

Weak values and Kirkwood--Dirac (KD) quasiprobability distributions have been independently associated with both foundational issues in quantum theory and advantages in quantum metrology. We propose simple quantum circuits to measure weak values, KD distributions, and spectra of density matrices without the need for post-selection. This is achieved by measuring unitary-invariant, relational properties of quantum states, which are functions of Bargmann invariants, the concept that underpins our unified perspective. Our circuits also enable experimental implementation of various functions of KD distributions, such as out-of-time-ordered correlators (OTOCs) and the quantum Fisher information in post-selected parameter estimation, among others. An upshot is a unified view of nonclassicality in all those tasks. In particular, we discuss how negativity and imaginarity of Bargmann invariants relate to set coherence.

The hexatic phase is an intermediate stage in the melting process of a 2D crystal due to topological defects. Recently, this exotic phase was experimentally identified in the vortex lattice of 2D weakly disordered superconducting MoGe by scanning tunneling microscopic measurements. Here we study this vortex state by the Nernst effect, which is an effective and sensitive tool to detect vortex motion, especially in the superconducting fluctuation regime. We find a surprising Nernst sign reversal at the melting transition of the hexatic phase. We propose that they are a consequence of vortex dislocations in the hexatic state which diffuse preferably from the cold to hot.

Optical spectroscopy the measurement of electromagnetic spectra is fundamental to various scientific domains and serves as the building block of numerous technologies. Computational spectrometry is an emerging field that employs an array of photodetectors with different spectral responses or a single photodetector device with tunable spectral response, in conjunction with numerical algorithms, for spectroscopic measurements. Compact single photodetectors made from layered materials are particularly attractive, since they eliminate the need for bulky mechanical and optical components used in traditional spectrometers and can easily be engineered as heterostructures to optimize device performance. However, compact tunable photodetectors are typically nonlinear devices and this adds complexity to extracting optical spectra from the device response. Here, we report on the training of an artificial neural network (ANN) to recover the full nonlinear spectral photoresponse of a nonlinear problem of high dimensionality of a single GeSe-InSe p-n heterojunction device. We demonstrate the functionality of a calibrated spectrometer in the spectral range of 400-1100 nm, with a small device footprint of ~25X25 micrometers, and we achieve a mean reconstruction error of 0.0002 for the power-spectrum at a spectral resolution of 0.35 nm. Using our device, we demonstrate a solution to metamerism, an apparent matching of colors with different power spectral distributions, which is a fundamental problem in optical imaging.

The grapheme breakthrough in 2004 led to extensive research into the family of twodimensional semiconducting materials (2D SCMs)[1]. The growing attention toward 2D semiconductors can be attributed to the challenges in achieving a substantial bandgap in graphene [1]. Despite its great properties, graphene lacks a bandgap that limits its targeted applications. 2D SCMs are emerging semiconductor materials that promise to overcome this limitation and offer new properties for specific applications [2]. Intriguingly, they have excellent performance even at the monolayer. The complex band structures and the heterostructures free of lattice-mismatch offer potential avenues for tailoring specific mechanisms to cater to the requirements of diverse electronic systems. Over hundreds of distinct 2D SCMs have been successfully isolated through experimentation, exhibiting bandgap values ranging from a few millielectronvolts to several electronvolts [2]. Additionally, several other semiconductors are expected to be extracted soon. Thanks to the wide range of available 2D materials, one can use a specific SCM for tailored applications. Researchers have successfully produced single layers of different materials like boron nitride, silicon, boron, germanium, phosphorus, and transition metal dichalcogenides (TMDCs)[3]. Additionally, heterostructures of these 2D SCMs have been synthesized by simply integrating multiple layers of these specific materials [4]. Engineering 2D SCMs in the nanoscale dimensions provides unprecedented opportunities for advancing nextgeneration technologies. The confinement observed in reduced dimensionality systems …

Intraocular pressure (IOP) measurements comprise an essential tool in modern medicine for the early diagnosis of glaucoma, the second leading cause of human blindness. The world's highest prevalence of glaucoma is in low-income countries.Current diagnostic methods require experience in running expensive equipment as well as the use of anesthetic eye drops. We present herein a remote photonic IOP biomonitoring method based on deep learning of secondary speckle patterns, captured by a fast camera, that are reflected from eye sclera stimulated by an external sound wave. By combining speckle pattern analysis with deep learning, high precision measurements are possible.

The significant heterogeneity of Wilms’ tumors between different patients is thought to arise from genetic and epigenetic distortions that occur during various stages of fetal kidney development in a way that is poorly understood. To address this, we characterized the heterogeneity of alternative mRNA splicing in Wilms’ tumors using a publicly available RNAseq dataset of high-risk Wilms’ tumors and normal kidney samples. Through Pareto task inference and cell deconvolution, we found that the tumors and normal kidney samples are organized according to progressive stages of kidney development within a triangle-shaped region in latent space, whose vertices, or “archetypes,” resemble the cap mesenchyme, the nephrogenic stroma, and epithelial tubular structures of the fetal kidney. We identified a set of genes that are alternatively spliced between tumors located in different regions of latent space and found that many of these genes are associated with the Epithelial to Mesenchymal Transition (EMT) and muscle development. Using motif enrichment analysis, we identified putative splicing regulators, some of which are associated with kidney development. Our findings provide new insights into the etiology of Wilms’ tumors and suggest that specific splicing mechanisms in early stages of development may contribute to tumor development in different patients.

Recent progress has boosted the resolving power of optical microscopies to spatial dimensions well below the diffraction limit. Yet, axial super-resolution and axial single-molecule localisation typically require more complicated implementations than their lateral counterparts. In the present work, we propose a simple solution for axial metrology by providing a multi-layered single-excitation, dual-emission test slide, in which axial distance is colour-encoded. Our test slide combines on a standard microscope coverslip substrate two flat, thin, uniform and brightly emitting fluorophore layers, separated by a nanometric transparent spacer layer having a refractive index close to a biological cell. The ensemble is sealed in an index-matched protective polymer. As a proof-of-principle, we estimate the light confinement resulting from evanescent-wave excitation in total internal reflection fluorescence (TIRF) microscopy. Our test sample permits, even for the non-expert user, a facile axial metrology at the sub-100-nm scale, a critical requirement for axial super-resolution, as well as near-surface imaging, spectroscopy and sensing.

Iron-sulfur [Fe-S] clusters are essential protein cofactors allowing bacteria to perceive environmental redox modification and to adapt to iron limitation. Escherichia coli, which served as a bacterial model, contains two [Fe-S] cluster biogenesis systems, ISC and SUF, which ensure [Fe-S] cluster synthesis under balanced and stress conditions, respectively. However, our recent phylogenomic analyses revealed that most bacteria possess only one [Fe-S] cluster biogenesis system, most often SUF. The opportunist human pathogen Pseudomonas aeruginosa is atypical as it harbors only ISC. Here, we confirmed the essentiality of ISC in P. aeruginosa under both normal and stress conditions. Moreover, P. aeruginosa ISC restored viability, under balanced growth conditions, to an E. coli strain lacking both ISC and SUF. Reciprocally, the E. coli SUF system sustained growth and [Fe-S] cluster-dependent enzyme activities of …

Topological nanophotonics presents the potential for cutting-edge photonic systems, with a core aim revolving around the emergence of topological edge states. These states are primed to propagate robustly while embracing deep subwavelength confinement that defies diffraction limits. Such attributes make them particularly appealing for nanoscale applications, where achieving these elusive states has remained challenging. We unveil the first experimental proof of deep subwavelength topological edge states by implementing periodic modulation of hyperbolic phonon polaritons within a Van der Waals heterostructure. This finding represents a significant milestone in the field of nanophotonics, and it can be directly extended to and hybridized with other Van der Waals materials in various applications. The extensive scope for material substitution facilitates broadened operational frequency ranges, streamlined integration of diverse polaritonic materials, and compatibility with electronic and excitonic systems.

A critical current challenge in the development of all-solid-state lithium batteries (ASSLBs) is reducing the cost of fabrication without compromising the performance. Here we report a sulfide ASSLB based on a high-energy, Co-free LiNiO2 cathode with a robust outside-in structure. This promising cathode is enabled by the high-pressure O2 synthesis and subsequent atomic layer deposition of a unique ultrathin LixAlyZnzOδ protective layer comprising a LixAlyZnzOδ surface coating region and an Al and Zn near-surface doping region. This high-quality artificial interphase enhances the structural stability and interfacial dynamics of the cathode as it mitigates the contact loss and continuous side reactions at the cathode/solid electrolyte interface. As a result, our ASSLBs exhibit a high areal capacity (4.65 mAh cm−2), a high specific cathode capacity (203 mAh g−1), superior cycling stability (92% capacity retention …

Nuclear forward scattering (NFS) is a synchrotron-based technique relying on the recoil-free nuclear resonance effect similar to Mössbauer spectroscopy. In this work, we introduce NFS for in situ and operando measurements during electrocatalytic reactions. The technique enables faster data acquisition and better discrimination of certain iron sites in comparison to Mössbauer spectroscopy. It is directly accessible at various synchrotrons to a broad community of researchers and applicable to multiple metal isotopes. We demonstrate the power of this technique with the hydrogen evolution mechanism of an immobilized iron porphyrin supported on carbon. Such catalysts are often considered as model systems for iron-nitrogen-carbon (FeNC) catalysts. Using in situ and operando NFS in combination with theoretical predictions of spectroscopic data enables the identification of the intermediate that is formed prior to the rate determining step. The conclusions on the reaction mechanism can be used for future optimization of immobilized molecular catalysts and metal-nitrogen-carbon (MNC) catalysts.

Immunoglobulins (IGs), critical components of the human immune system, are composed of heavy and light protein chains encoded at three genomic loci. The IG Kappa (IGK) chain locus consists of two large, inverted segmental duplications. The complexity of IG loci has hindered effective use of standard high-throughput methods for characterizing genetic variation within these regions. To overcome these limitations, we leverage long-read sequencing to create haplotype-resolved IGK assemblies in an ancestrally diverse cohort (n=36), representing the first comprehensive description of IGK haplotype variation at population-scale. We identify extensive locus polymorphism, including novel single nucleotide variants (SNVs) and a common novel ~24.7 Kbp structural variant harboring a functional IGKV gene. Among 47 functional IGKV genes, we identify 141 alleles, 64 (45.4%) of which were not previously curated. We report inter-population differences in allele frequencies for 14 of the IGKV genes, including alleles unique to specific populations within this dataset. Finally, we identify haplotypes carrying signatures of gene conversion that associate with enrichment of SNVs in the IGK distal region. These data provide a critical resource of curated genomic reference information from diverse ancestries, laying a foundation for advancing our understanding of population-level genetic variation in the IGK locus.

Digital holographic microscopy (DHM) is a very popular interferometric technique for quantitative phase imaging (QPI). In DHM, an interferometer is combined with a microscope to create interference between an imaging beam containing information about the analysed sample and a clear reference beam carrying no sample information. To exploit the capability of reference beam in terms of useful sample information, we have recently proposed Cepstrum-based Interferometric Microscopy (CIM) [Opt. Las. Tech. 174, 110,626 (2024)] as a novel methodology involving the interference of two imaging beams carrying different sample information and to accurately retrieve quantitative phase data of both beams. In the earlier implementation, proof-of-concept of CIM was demonstrated for a Michelson-based layout requiring manual adjustments during the CIM methodology and validated only for low numerical aperture (NA …

Recent advancements in ultrafast electron microscopy have provided direct access to polariton dynamics, visualizing such dynamics in space and time. This work presents new experimental results revealing a myriad of phenomena involving interactions of vortex-anti-vortex pairs, their creation and annihilation. We show new behaviors that became accessible thanks to a new development in electron microscopy - Free-Electron Ramsey Imaging (FERI) - which enabled extracting both the sub-cycle and group dynamics of polariton wavepackets. Our demonstrations involve optical phonon-polaritons in hexagonal boron nitride (hBN) and Molybdenum oxide, renowned for their unique dispersion and novel wavepacket propagations behaviors. These discoveries not only enhance our understanding of vortex phenomena across various systems, but also offer promising avenues for accessing new kinds of light-matter …

ZP12. 00011: Down-Converted X-ray Pair Generation at an X-ray Free Electron Laser*AbstractPresenter:Nicholas John Hartley(SLAC-Natl Accelerator Lab)Authors:Nicholas John Hartley(SLAC-Natl Accelerator Lab)Andrew L Aquila(Linac Coherent Light Source, SLAC National Accelerator Laboratory)James Baxter(Linac Coherent Light Source, SLAC National Accelerator Laboratory)Scott Curtis(Brigham Young University)Arianna E Gleason(SLAC-Natl Accelerator Lab)Siegfried H Glenzer(SLAC National Accelerator Laboratory)Justin Goodrich(Brookhaven National Laboratory)Alex Halavanau(SLAC National Accelerator Laboratory)Janita Hussain(SLAC National Accelerator Laboratory)Abigail M Hardy(Brigham Young University)Taito Osaka(RIKEN SPring-8 Center)Norimasa Ozaki(Osaka Univ)Sharon Shwartz(Bar-Ilan University)Richard Lunt Sandberg(Brigham Young University)Spontaneous Parametric Down …

The interface between chirality and crystallization and mechanisms by which chirality propagates from crystal structure to overall shapes of crystals are a key topic in crystallography and stereochemistry. Recently, nanocrystals attracted attention as useful model systems for this kind of studies. Specifically, tellurium nanocrystals have been used to address questions on relations between chirality of the crystal structure and that of the overall shape. Previous studies of this system did not offer a comprehensive shape diagram and did not survey all the factors that determine whether shapes that form are chiral or not. In the current report, the distribution of chiral and achiral shapes in this system as a function of different physical and chemical parameters is determined experimentally. It is shown that there is a common logic for formation of chiral shapes, that is, growth at conditions that favor the growth of more reactive …